Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00230 ATGGGAAAAGAGAAGGTTCACATTAACATCGTGGTCATTGGCCATGTCGACTCTGGGAAGTCAACTACCACTGGCCACTCGATTTACAAGCTTGGAGGTATTAACAAGCGTGTTATTGAGAGGTTTGAGAAAGAAGCTACCGAAATGAACAAGAGGTCATTCAAATATGCCTGGGCGGACTGTGCTGTCCTTATCATGGACTCCGCAACTGGTGGTTTTGAAGCTGGTATTTCCAAAGATGGACAGACTCGGGAGCATGCTCTACTTGCCTTCACCCTTGGGGTCAAGCAAATGATCTGTTACTGTAATAAGATGGATGCCACTACTCCAAAGTACTCTAAGGCTAGGTATGATGAAATTGTGAAGGAAGTTTCTTCCTACTTGCAGAAGGTTGGTTACAACCCATACAAAATTCCATTTGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTTGACTGGTACAAGGGTCCAACTCTTCTTGAGGCTCTTGACCAGATCAATGAGCCTAAGAGACCATCACACAAGCCTCTGAGACTTCCTTTGCAGGATGTCTACAAGATTGGTGGTATTGGAACTGTTCCATTGGGTCGTGTTGAAACTGGTGTCTTGAAGCCTGGTATGGTTGTGACTTTTGCTCCAACTGGTCTGACAACCGAAGTTAAGTCTGTGGAGATGCACCATGAAGCTCTCCAAGAGGCACTACCTGGTGACAATGTGGGATTTAATGTGAAGAATGTTGCAGTCAAGGATCTCAAGCGTGGTTTTGTTGCCTCAAACACCAAGGATGATCCTGCCAAGGAGGCTGCCAACTTCACATCCCAAGTCATTATAATGAACCATCCCGGTCAGATTGGAAATGGTTTTGCTCCTGTGCTTGACTGCCACACTTCTCACATTGCTGTCAAGTTTGCAGAACTTGTGACTAAGATTGATAGGCGATCTGGTAAAGAGCTTGAGAAGGAGCCCAAGTTTTTGAAAAATGGAGATGCAGGATTTGTTAAGATGATTCCTACCAAGCCCATGGTCGTTGAAACTTTCTCCGAGTATCCTCCTCTTGGTCGTTTTGCTGTGAGGGACATGCGACAAACTGTGGCTGTGGGAGTTATCAAGAGTGTGGAGAAGAAGGACCCCACTGGAGCCAAGGGTACCAAGGCTGCACAGAAGAAGTGA 1191 0.461 MGKEKVHINIVVIGHVDSGKSTTTGHSIYKLGGINKRVIERFEKEATEMNKRSFKYAWADCAVLIMDSATGGFEAGISKDGQTREHALLAFTLGVKQMICYCNKMDATTPKYSKARYDEIVKEVSSYLQKVGYNPYKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQINEPKRPSHKPLRLPLQDVYKIGGIGTVPLGRVETGVLKPGMVVTFAPTGLTTEVKSVEMHHEALQEALPGDNVGFNVKNVAVKDLKRGFVASNTKDDPAKEAANFTSQVIIMNHPGQIGNGFAPVLDCHTSHIAVKFAELVTKIDRRSGKELEKEPKFLKNGDAGFVKMIPTKPMVVETFSEYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKGTKAAQKK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00230 396 CDD EF1_alpha_II 182 270 - -
Spst1g00230 396 CDD EF1_alpha_III 273 376 - -
Spst1g00230 396 FunFam Elongation factor 1-alpha 179 266 - -
Spst1g00230 396 Pfam Elongation factor Tu C-terminal domain 271 379 IPR004160 -
Spst1g00230 396 PANTHER TRANSLATION FACTOR 4 59 - -
Spst1g00230 396 Gene3D - 60 176 IPR027417 -
Spst1g00230 396 Gene3D Translation factors 273 380 - -
Spst1g00230 396 Pfam Elongation factor Tu GTP binding domain 57 172 IPR000795 GO:0003924|GO:0005525
Spst1g00230 396 Pfam Elongation factor Tu GTP binding domain 6 45 IPR000795 GO:0003924|GO:0005525
Spst1g00230 396 FunFam Elongation factor 1-alpha 273 380 - -
Spst1g00230 396 Gene3D - 1 59 IPR027417 -
Spst1g00230 396 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 199 IPR027417 -
Spst1g00230 396 SUPERFAMILY Translation proteins 182 271 IPR009000 -
Spst1g00230 396 Pfam Elongation factor Tu domain 2 198 263 IPR004161 GO:0005525
Spst1g00230 396 Gene3D Translation factors 179 266 - -
Spst1g00230 396 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 276 379 IPR009001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00230 Spst-Chr1 3227721 3229168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00230 1 390 Eukaryotic Initiation Factors Gene Family AT5G60390 82.273 0.0 730
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00230 K03231 - gmx:100801611 723.005