Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00209 ATGGAATCCACTCTGGAGGCCAATCAGGAGACTCCACGTGTCAACAGGAAACACGTCACATCATCCCTTCATGCGTCCGTGTCCCACCCCTCCAAAAGTCCTCACCTTTTCGCTCACTTTTTCTTGCCCTCGCAGGACAAGAATACTCCTTCTTCAGACATTCAAACAACCTCTATTATGAAGAGGACGCGGAAACCGACCAAACGGTATCAGTCTTCTTCCTCCTCCTCTTCGTCTTCTTCGTCGCTTAAGCCGCACCGCCGCGGCAACCGGACCAAGACGCGGAGGCCCAAGTTCGTCAGCCTCCGTCTTCAGTTATCCGAGCCCAAGAACATGCCGGCCGAGCCCAACCCCAAGGTCCAACAGCAGCCGCAGTTGAACCTCTTTCCTCTGCATCCGGAGCACCAGGACATGCACGAGGAGCAGAACGTGGCGCTGCTCTTCAGCGCGGAGGGCGGGGCCACGCTGACGGGGCTGCTGGAGGAGGATTCGGCGTCGCCGTCGTCGGCGACTACGGAGGGATCGCTGTCGGCGCTGACGTGTCCGATGGAGGACGCGGGGAACTGGCTGGTGAGGAAGGCGATGCGGCGGAGGGAGAGCGAGGAGGGGAGCGAGGAGAGGTGGGTGTGCTACTCGGAGGTAGTGGAGGAGAAGAAGGAGGTGATGGAGGAGGTGACGAGTTACTGCGTCACGGGGAAAGCCACGACTACGACGTCGTTTGGGTTGTTGTCCTTGAAACTGGATCACCAGGGGATATTGAATGCTTGGTCTGATAAAGGCTCGTTATACGTCGCGGGGGAGGGGGCCCCACACACTGTCCCAGACTTCCTCAATGGTTTCCTCCTTCATAATTCCCTCATCCCCCATGTTGCATGGGATGGTTGGGGGAGTGGTGTGGTTGGGAACGCATGGAATGTTGCTGAAGATTGTGGGGCTAACAAGAGAAATGTGAAGGAAGAAAATGGTTGGAAGTTGGGGCAGAGAGAGGCAAGTGTGCAGAGATACAAGGAGAAGAGGCAAAGCAGGCTCTTCTCGAAGAAGATCCGTTACGAAGTTCGCAAGCTGAATGCTGAGAAACGGCCCAGGATGAAGGGACGATTTGTGAAGAGGGAATGA 1116 0.5654 MESTLEANQETPRVNRKHVTSSLHASVSHPSKSPHLFAHFFLPSQDKNTPSSDIQTTSIMKRTRKPTKRYQSSSSSSSSSSSLKPHRRGNRTKTRRPKFVSLRLQLSEPKNMPAEPNPKVQQQPQLNLFPLHPEHQDMHEEQNVALLFSAEGGATLTGLLEEDSASPSSATTEGSLSALTCPMEDAGNWLVRKAMRRRESEEGSEERWVCYSEVVEEKKEVMEEVTSYCVTGKATTTTSFGLLSLKLDHQGILNAWSDKGSLYVAGEGAPHTVPDFLNGFLLHNSLIPHVAWDGWGSGVVGNAWNVAEDCGANKRNVKEENGWKLGQREASVQRYKEKRQSRLFSKKIRYEVRKLNAEKRPRMKGRFVKRE 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00209 371 Pfam CCT motif 328 370 IPR010402 GO:0005515
Spst1g00209 371 MobiDBLite consensus disorder prediction 69 85 - -
Spst1g00209 371 PANTHER CCT MOTIF FAMILY PROTEIN, EXPRESSED 58 371 - -
Spst1g00209 371 ProSiteProfiles CCT domain profile. 328 370 IPR010402 GO:0005515
Spst1g00209 371 MobiDBLite consensus disorder prediction 44 61 - -
Spst1g00209 371 MobiDBLite consensus disorder prediction 1 29 - -
Spst1g00209 371 MobiDBLite consensus disorder prediction 42 100 - -
Spst1g00209 371 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00209 Spst-Chr1 2941044 2944984 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00209 243 370 C2C2-CO-like Transcription Factor Family AT1G73870 45.312 8.01e-24 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Spst1g00209 CCT 1.3e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00209 - - gmx:100811815 473.781