Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00198 ATGAAGCTCCAACCCTGTTGGCTGCTTCTTCTAATATACTTTTATGAATTTTCTCGATACGATGCTGCTAATTCTTCTCAGCTTGCATCTGAAACAAATGCTTTGTTGCAGTGGAAAGCCAGCCTTGACAATCACAGTCAAGCTTCTCTCTCCTCATGGACTGCCAATACTTCTTGCAATTGGCTCGGAATTACATGTGATGACTCCAATTCTGTGTCCAAAATAAATCTTACAAGTATTGGATTAAGAGGTACGCTTGAAAATCTCAACTTTTCCTTCCTTACAAACATTCGCACTCTGATTGTGAGTAACAACTCCTTGAATGGGAGTATACCTCCTCAAATTGGACTCCTGTCCAATCTCCATACTCTTGATCTCTCTGTTAATGAACTCTCTGGCAGCATTCCTAGTACCATTGGTGACCTATCCAAACTTTCATATCTTAGTCTTAGTACAAATCATATCTCTGGGATTATTCCTTCTCAAATAACCCTCTTGATTGGCCTTCAAACATTGTTCATGGGTTACAATATTTTTACTGGCTCCCTTCCTCAAGAAATAGGGAGACTAAGGGATCTGAGCATACTTGATATTCCTTTGTCCAATCTCACAGGTACAATCCCAATCTCCATAGAGAAGTTATCCAATTTGTCTCATCTAGATGTTGGAGGCAACAACCTTTCTGGCAGCATTCCTCAGAGAATTTGGCATATGGACCTTCAGCATTTGTCTCTTGCGAATAATAACTTTAATGGCTTCATCCCCAAAGAAATTGTGAATTTGAGGAACCTGGAGATTCTATATCTTCATAATAGTGGCCTTTCCGGCACCATGCCCGAAGAAATTGGGATCTTAGGGAAAATAAGAGAGCTCGACATGAGCAATTGTAGTCTTATTGGGTCCATTCCTACTTCAATTGGAGCTTTGACCAATATAACACTTCTCAAGTTAGAAGACAATCAACTTTTTGGTCAGATTCCTCTTGAAGTTGGAAAGTTGATTAACCTCAACGGTCTATATCTTGGAGATAATCATCTTTCTGGCTCAATTCCTGATGAAATTGGACTTCTGAAAAATCTCAGTCAACTTGATTTGTCTAGTAACTTTCTCTCTGGGAAAATCCCCTCCACAATTGGAAACTTAAGCAATTTAGTGTATCTTTACCTTTATGGAAACAGATTCTCTGGTTCTATCCCTGATGAAGTGGGAAATCTCCGTTCTCTTTTCGAACTCCAATTGTTGGACAACAACCTCTTTGGACCAATCCCGACTTCCATAGGTAACATGGTCAATTTGAATAACATTCGTCTTGATAAAAATAAACTCTCTGGATCAATTCCTTCAACTATTACAAATTTGTCAAAGCTGAGTGGATTATATTTATCATCAAATGAACTTACTGGACAAATCCCGGCTCCCATTGGAAACATGGTCAATTTGGTCTCCATTTTTCTTCATGTAAACAATTTCTCTAGATCTATTCCGTCCTCTATTGGAAATTTGTCGAAGCTAAATGTACTATATTTATCATCAAATGAACTTACTGGACAAATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCGTGAATTATCTTTGATTGAAAATTATCTTAGCGGCAAGATTCCAATAGAAATGGTCAGACTCACTGATTTGGAAAATTTGCAGCTAGCTGATAATAATTTTGTTGGTCATTTACCTCAGAACGTTTGCATTGGTGGAAAGTTGCAATACTTTTCTGCTAGCACTAACAATTTCACAGGCCATATTCCGGAGAGTTTGAGGAATTGCTGCAGCCTTAGAAGAGTCAGGCTTCAGAAAAATCAATTAACTGGAAATATAACAGATGCTTTTGGTGTACTTCCAAACTTGGACTATCTTGAATTGAGTGAAAATAATTTTTATGGTCACCTTTCACCTAATTGGGGGAAGTTCCGTAGCCTCACAAGTCTCAAGATCTCTAACAATAATTTATCAGGCGTTATACCAACAGAGCTAGGCGAGGCAACCAAATTAGGTGTACTTTGGTTATTCTCAAATCATCTTACAGGAAATATTCCACAAGAGTTAAGTAACTTGGCTTTTTTGTTTGATCTCTCACTCGACAGCAATAATCTTTCAGGAAATGTTCCCACAGAAATAGCTTCAATGCAGAATCTTCGAATTTTGAGGCTTGGGTCTAATAATTTGTCTGGCTTAATTCCAAACCAACTTGGAAATTTGCTCAATTTATTGAACATGAATTTGAACCAGAATAAATTTGAGGGAAATATTCCTTTAGAGTTTGGCAAATTGAATTCTCTTACAAGTCTTGATCTTAGTGAGAATTTGTTGACAGGAAGATTAACACACATGCTTGGAGAATTGAGAAAATTAGAAACATTGAATCTTTCTCACAATAATCTTTCAGGTGATCTTTCTAGCTTTGATGGTATGGAAAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCCACTTCCAAACATTTTAGCCTTCCGCAATGCTACAATTGAAGCATTAAGACATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTGGAGCCTTGCCAAACATTAACCACAGAACATTTTGACGACAGGCATCTTATTGGAGTTGGAGGCAAAGGACGAGTATACAAAGCAATGTTGCCCACAGGTCAAGTTGTTGCTGTAAAGAAACTGCATTCAGCTCCAAATGGAGAAATGTTCAATCAAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAAAAATTCGACATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCTCAAATCTCATTTTTGGTGTGTGAATTTCTTGAGAAGGGCGATGTGGAGAAGATTTTGAAGAATGATGAACAAGCAATTGCGTTTGACTGGAATAAAAGAGTGAATATTGTTAAAGGGGTAGCAAATGCTTTATGCTATATGCATCATGGTTGTTCACCTCCAATTCTACATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCAGAATACGTAGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTAATCCAAATTCATCAAATTGCACCTCATTTGTAGGAACTTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAGGTAAATGAGAAATGTGACGTGTATAGTTTTGGAGTGTTGGCATGCGAAATACTTCTTGGAAACCACCCAGGTGATTTTATATCTTCTTCGTTGCTATCATCTTCATCTACTGGTGTGACCTTAAATCTTGATCCTCTGGTATTGATGGATAAGTTGGACCAACGTCTCCCTCATCCAACAAAACTTATTGTTGAGGAGGTTGCATCAATTGCGAAGGTAGCACTAGCATGCTTGACTGAAAGTCCACGATCTCGCCCTACTATGGAGCATGCTGTCAATGATTTTGAAATGTAA 3432 0.3791 MKLQPCWLLLLIYFYEFSRYDAANSSQLASETNALLQWKASLDNHSQASLSSWTANTSCNWLGITCDDSNSVSKINLTSIGLRGTLENLNFSFLTNIRTLIVSNNSLNGSIPPQIGLLSNLHTLDLSVNELSGSIPSTIGDLSKLSYLSLSTNHISGIIPSQITLLIGLQTLFMGYNIFTGSLPQEIGRLRDLSILDIPLSNLTGTIPISIEKLSNLSHLDVGGNNLSGSIPQRIWHMDLQHLSLANNNFNGFIPKEIVNLRNLEILYLHNSGLSGTMPEEIGILGKIRELDMSNCSLIGSIPTSIGALTNITLLKLEDNQLFGQIPLEVGKLINLNGLYLGDNHLSGSIPDEIGLLKNLSQLDLSSNFLSGKIPSTIGNLSNLVYLYLYGNRFSGSIPDEVGNLRSLFELQLLDNNLFGPIPTSIGNMVNLNNIRLDKNKLSGSIPSTITNLSKLSGLYLSSNELTGQIPAPIGNMVNLVSIFLHVNNFSRSIPSSIGNLSKLNVLYLSSNELTGQIPSTIGNLSKLRELSLIENYLSGKIPIEMVRLTDLENLQLADNNFVGHLPQNVCIGGKLQYFSASTNNFTGHIPESLRNCCSLRRVRLQKNQLTGNITDAFGVLPNLDYLELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPTELGEATKLGVLWLFSNHLTGNIPQELSNLAFLFDLSLDSNNLSGNVPTEIASMQNLRILRLGSNNLSGLIPNQLGNLLNLLNMNLNQNKFEGNIPLEFGKLNSLTSLDLSENLLTGRLTHMLGELRKLETLNLSHNNLSGDLSSFDGMESLTSIDISYNEFEGPLPNILAFRNATIEALRHNKGLCGNVSGLEPCQTLTTEHFDDRHLIGVGGKGRVYKAMLPTGQVVAVKKLHSAPNGEMFNQKAFTSEIQALTKIRHRNIVKLYGFCSHSQISFLVCEFLEKGDVEKILKNDEQAIAFDWNKRVNIVKGVANALCYMHHGCSPPILHRDISSKNVLLDSEYVAHVSDFGTAKFLNPNSSNCTSFVGTFGYAAPELAYTMEVNEKCDVYSFGVLACEILLGNHPGDFISSSLLSSSSTGVTLNLDPLVLMDKLDQRLPHPTKLIVEEVASIAKVALACLTESPRSRPTMEHAVNDFEM 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00198 1143 Gene3D Phosphorylase Kinase; domain 1 860 945 - -
Spst1g00198 1143 ProSiteProfiles Leucine-rich repeat profile. 791 813 IPR001611 GO:0005515
Spst1g00198 1143 PRINTS Leucine-rich repeat signature 789 802 - -
Spst1g00198 1143 PRINTS Leucine-rich repeat signature 768 781 - -
Spst1g00198 1143 FunFam Leucine-rich repeat receptor protein kinase EMS1 185 279 - -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 29 182 IPR032675 -
Spst1g00198 1143 Gene3D Transferase(Phosphotransferase) domain 1 946 1143 - -
Spst1g00198 1143 FunFam MDIS1-interacting receptor like kinase 2 isoform A 472 570 - -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 637 733 IPR032675 -
Spst1g00198 1143 ProSitePatterns Tyrosine protein kinases specific active-site signature. 991 1003 IPR008266 GO:0004672|GO:0006468
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 284 352 IPR032675 -
Spst1g00198 1143 FunFam Uncharacterized protein 571 867 - -
Spst1g00198 1143 FunFam MDIS1-interacting receptor like kinase 2 946 1143 - -
Spst1g00198 1143 Pfam Protein kinase domain 869 1139 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00198 1143 ProSiteProfiles Protein kinase domain profile. 867 1143 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00198 1143 SUPERFAMILY Protein kinase-like (PK-like) 860 1141 IPR011009 -
Spst1g00198 1143 SMART LRR_sd22_2 357 383 - -
Spst1g00198 1143 SMART LRR_sd22_2 118 144 - -
Spst1g00198 1143 SMART LRR_sd22_2 789 814 - -
Spst1g00198 1143 SMART LRR_sd22_2 214 229 - -
Spst1g00198 1143 SMART LRR_sd22_2 309 338 - -
Spst1g00198 1143 SMART LRR_sd22_2 501 527 - -
Spst1g00198 1143 FunFam Leucine-rich repeat receptor protein kinase MSP1 860 945 - -
Spst1g00198 1143 SUPERFAMILY RNI-like 242 617 - -
Spst1g00198 1143 FunFam Leucine-rich receptor-like protein kinase family protein 280 375 - -
Spst1g00198 1143 SUPERFAMILY L domain-like 66 328 - -
Spst1g00198 1143 SUPERFAMILY L domain-like 576 851 - -
Spst1g00198 1143 FunFam Nuclear pore complex protein NUP107 28 184 - -
Spst1g00198 1143 FunFam Leucine-rich repeat receptor-like protein kinase PXL1 377 471 - -
Spst1g00198 1143 Pfam Leucine rich repeat N-terminal domain 29 67 IPR013210 -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 734 859 IPR032675 -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 183 282 IPR032675 -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 547 636 IPR032675 -
Spst1g00198 1143 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Spst1g00198 1143 Pfam Leucine rich repeat 787 824 IPR001611 GO:0005515
Spst1g00198 1143 Pfam Leucine Rich Repeat 359 381 IPR001611 GO:0005515
Spst1g00198 1143 Pfam Leucine Rich Repeat 287 308 IPR001611 GO:0005515
Spst1g00198 1143 SMART LRR_typ_2 94 117 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 549 573 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 717 740 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 621 644 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 645 669 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 765 788 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 118 142 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 789 811 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 453 477 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 381 405 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 501 525 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 333 357 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 261 285 IPR003591 -
Spst1g00198 1143 SMART LRR_typ_2 214 238 IPR003591 -
Spst1g00198 1143 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 864 1141 - -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 449 546 IPR032675 -
Spst1g00198 1143 Gene3D Ribonuclease Inhibitor 353 448 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00198 Spst-Chr1 2822131 2825916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00198 26 663 Receptor kinase-like Gene Family AT4G08850 36.801 2.73e-104 350
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00198 Pkinase 7.7e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00198 - - gmx:106794215 1074.31