Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00197 ATGGTGTTCATATTTCCAACGTTTCTGTCCATGAAGCTCCAACCCTTTTTGCTGCTTCTTCTTCTTCTAATATACTTTTCTGAATTTTCCCACTATGATGCTGCTATTTCTTCTCAGATTGCTTCTGAAACAAATGCTTTGTTGAAGTGGAAAGCCAGCCTTGACAATCACAGTCAAGCTTCTCTCTTTTCATGGACTGGCAATACTTCTTGTAATTGGCTCGGAATTACATGTGATGACTCCAATTCTGTGTCTAAAATAAATCTTACAAGTATTGGATTAAGAGGTACGCTTGAAAATCTCAACTTTTCCTTCCTTACAAACATTCGCACTCTGATTATGAGTAACAACTCCTTGAATGGGAGTATACCTCCTCAAATTGGACTCCTGTCCAATCTCCATACTCTTGATCTCTCTGTTAATGAACTCTCTGGCAGCATTCCTAGTACCATTGGTGACCTATCCAAACTTTCATATCTTAGTCTTAGTACAAATCATATCTCTGGGATTATTCCTTCTCAAATAACCCTCTTGATTGGCCTTCAAACATTGTTCATGGGTTATAATATTTTTACTGGCTCCCTTCCTCAAGAAATAGGGAGACTAAGGGATCTGAGCATACTTGATATTCCTTGGTCCAATCTCACAGGTACAATCCCAATCTCCATAGAGAAGTTATACAATTTGTCTCATCTGGATGTTGGAGGCAACAACCTTTCTGGGAGCATTCCTCAGAGAATTTGGCATATGGACCTTCAGCATTTGTCACTTGCAGTTAATAAGTTCAATGGTTCCATCCCCAAAGAAATCGTGAATTTGAGGAACCTGGAGATTCTATATCTTCAGAATAGTGGCCTTTCCGGCACTTTGCCCGAAGAAATTGGGATGTTAGGGAAAATAAGAGAGCTCGACATGAGCAATTGTAGTCTTATTGGGTCCATTCCTACTTCAATTGGAGCTTTGACCAATATAACACTTCTCAAGTTAGAAGACAATCAACTTTTTGGTCAGATTCCTCTTGAAGTTGGAAAGTTGATTAACCTCAACAGTCTATATTTTGGAGGTAATCATCTTTCTGGCTCAATTCCGGATGAAATTGGACTTCTGAAAAATCTCAGTCAACTTGATTTGTCTAGTAACTTTCTCTCTGGGAAAATCCCCTCCACAATTGGAAACTTAAGCAATTTAGTGTATCTTTACCTTTATGGAAACAGATTCTCTGGTTCTATCCCTGATGAAGTGGGAAATCTCCGTTCTCTTTCCGAACTCCAATTGTTGGACAACAACCTATTTGGACCAATCCCGACTTCCATAGGTAACATGGTCAATTTGAATAACATTCGTCTTGATAACAATAAACTCTCTGGATCAATTCCTTCAATTATTACAAATTTGTCAAAGCTAAGCGTATTAATTTTATCATCAAACGAGCTTACTGGACAAATTCCTTCCACTATTGGAAATTTGTCGAAGCTTCGTGAATTATCTTTGATTGAAAATTATCTTAGCGGCAAGATTCCAATAGAAATGGTCAGACTCACTGATTTGAAAAATTTGCAGCTAGCTGATAATAATTTTGTTGGTCATTTACCTCAGAACGTTTGCATTGGTGGAAAGTTGCAATACTTTTCTGCTAGCACTAACAATTTCACAGGCCATATTCCGGAGAGTTTGAGGAATTGCTCCAGCCTTATAAGAGTCAGGCTTCAGAAAAATCAATTAACTGGAAATATAACAGATGCTTTTGGTGTACTTCCAAACTTGTACTATCTTGAATTGAGTGAAAATAATTTTTATGGTCACCTTTCACCTAATTGGGGGAAGTTCCGTAGCCTCACAAGTCTCAAGATCTCTAACAATAATTTATCAGGCGTTATACCATCAGAGCTAGGCGAGGCAACCAAATTAGGTGTACTTTGGTTATTCTCAAATCATCTTACAGGAAATATTCCACAAGAGTTAAGTAACTTGGCTTTTTTGTTTGATCTCTCACTCAACAACAATAATCTTTCAGGAAATGTTCCCACAGAAATAGCTTCAATGCAGAATCTTCAAATTTTGAGGCTTGGTTCTAATAATTTGTCTGGCTTAATTCCAAACCAACTTGGAAATTTGCTCAATTTATTGAACATGAATTTGAGCCAGAATAAATTTGAGGGAAATATTCCTTTAGAGTTTGGCAAATTGAATTCTCTTACAAGTCTTGATCTTAGTGAGAATTTGTTGACAGGAAGGTTAACACACATGCTTGGAGAATTGAGAAAATTAGAAACATTGAATCTTTCTCACAATAATCTTTCAGGTGATCTTTCTAGCTTTGATGGTATGGAAAGCTTGACATCTATTGATATATCTTACAATGAGTTTGAGGGTCTACTTCCAAACATTTTAGCCTTCCGCAATGCTACAATTGAAGCATTAAGACATAATAAAGGCTTGTGTGGCAATGTTAGTGGCTTGGAGCCTTGCCCAACATTAAGTGGGAAATCACACAATCATATGACAAAGAAAGTCATAATAATAGTTTTACCCATTATTTTGGGCACTCTAATACTGGCATTATTTACTTTTGGAGTCTTGTATCATTTATGCCAAACTTCAATGAAAAAAGAAGAACAAACCACCAATTTACAAACTCCAAACACATTTGCAATATGGAGTTTTGATGGCAAAATGGTATTTGAGAATATTATAGAAGCCACAGAACATTTTGATGTGAAACATCTGATTGGAGTTGGAGGGCAAGGATCTGTTTACAAAGCAGTTTTGCCTACAGGTCAAGTTGTTGCTGTCAAGAAACTTCATTCTAATCCAAATGGAGAAATGCTTAATAAAAAAGCTTTCACAAGTGAGATCCAAGCTTTGACAGAAATTCGTCATCGTAACATTGTAAAGTTATATGGGTTTTGTTCACATTCTCAATTCTCATTTTTGGTGTGTGAATTTCTTGAGAAGGGTGATGTCGAGAAGATTTTGAAGAATGAAGAGCAAGCAATTGGATTTGAATGGAACAAAAGAGTGAATGTTGTTAAAGGAGTAGCAAATGCTTTATTTTATATGCATTGTGATTGTTCACCTCCAATTATTCATCGTGATATATCAAGCAAGAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCCAAGTTTCTTAATGCAAATTCATCCAATTCCACCTCATTTATAGGAACTTTTGGATATGCTGCTCCAGAACTTGCATATACAAGTGAGGCAAATGAGAAATGTGATGTGTATAGTTTTGGGGTATTGGCATTGGAAATATTGTTTGGAAGGCACCCAGGTGACATTACATCTTCTTTAATGATATCATCTTCATCAACTGGTGTGACCTCAACACTTGATCATATGGTATTCATGGATAAGTTGGATGAACGTCTCCCTTATCCTAGAAGCTCTACATTTAAGGAGGTGGTATCAATTGTGAAGATAGCAATCTCCTGCTTGACTGAAACCCCACAATCTCGTCCTACCATGGAGCAGGTTACCAAGAAGCTTGCAATTGAGCAGCTAGTGTGGTTAGCTCATGAGTAG 3570 0.3703 MVFIFPTFLSMKLQPFLLLLLLLIYFSEFSHYDAAISSQIASETNALLKWKASLDNHSQASLFSWTGNTSCNWLGITCDDSNSVSKINLTSIGLRGTLENLNFSFLTNIRTLIMSNNSLNGSIPPQIGLLSNLHTLDLSVNELSGSIPSTIGDLSKLSYLSLSTNHISGIIPSQITLLIGLQTLFMGYNIFTGSLPQEIGRLRDLSILDIPWSNLTGTIPISIEKLYNLSHLDVGGNNLSGSIPQRIWHMDLQHLSLAVNKFNGSIPKEIVNLRNLEILYLQNSGLSGTLPEEIGMLGKIRELDMSNCSLIGSIPTSIGALTNITLLKLEDNQLFGQIPLEVGKLINLNSLYFGGNHLSGSIPDEIGLLKNLSQLDLSSNFLSGKIPSTIGNLSNLVYLYLYGNRFSGSIPDEVGNLRSLSELQLLDNNLFGPIPTSIGNMVNLNNIRLDNNKLSGSIPSIITNLSKLSVLILSSNELTGQIPSTIGNLSKLRELSLIENYLSGKIPIEMVRLTDLKNLQLADNNFVGHLPQNVCIGGKLQYFSASTNNFTGHIPESLRNCSSLIRVRLQKNQLTGNITDAFGVLPNLYYLELSENNFYGHLSPNWGKFRSLTSLKISNNNLSGVIPSELGEATKLGVLWLFSNHLTGNIPQELSNLAFLFDLSLNNNNLSGNVPTEIASMQNLQILRLGSNNLSGLIPNQLGNLLNLLNMNLSQNKFEGNIPLEFGKLNSLTSLDLSENLLTGRLTHMLGELRKLETLNLSHNNLSGDLSSFDGMESLTSIDISYNEFEGLLPNILAFRNATIEALRHNKGLCGNVSGLEPCPTLSGKSHNHMTKKVIIIVLPIILGTLILALFTFGVLYHLCQTSMKKEEQTTNLQTPNTFAIWSFDGKMVFENIIEATEHFDVKHLIGVGGQGSVYKAVLPTGQVVAVKKLHSNPNGEMLNKKAFTSEIQALTEIRHRNIVKLYGFCSHSQFSFLVCEFLEKGDVEKILKNEEQAIGFEWNKRVNVVKGVANALFYMHCDCSPPIIHRDISSKNVLLDSEYVAHVSDFGTAKFLNANSSNSTSFIGTFGYAAPELAYTSEANEKCDVYSFGVLALEILFGRHPGDITSSLMISSSSTGVTSTLDHMVFMDKLDERLPYPRSSTFKEVVSIVKIAISCLTETPQSRPTMEQVTKKLAIEQLVWLAHE 1189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00197 1189 SUPERFAMILY Protein kinase-like (PK-like) 883 1179 IPR011009 -
Spst1g00197 1189 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1028 1040 IPR008266 GO:0004672|GO:0006468
Spst1g00197 1189 FunFam MDIS1-interacting receptor like kinase 2 isoform A 435 534 - -
Spst1g00197 1189 Pfam Leucine rich repeat 467 526 IPR001611 GO:0005515
Spst1g00197 1189 Pfam Leucine rich repeat 751 788 IPR001611 GO:0005515
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 343 510 IPR032675 -
Spst1g00197 1189 ProSiteProfiles Protein kinase domain profile. 904 1189 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00197 1189 Pfam Leucine Rich Repeat 371 393 IPR001611 GO:0005515
Spst1g00197 1189 Pfam Leucine Rich Repeat 299 320 IPR001611 GO:0005515
Spst1g00197 1189 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 463 1179 - -
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 42 153 IPR032675 -
Spst1g00197 1189 FunFam Uncharacterized protein 535 832 - -
Spst1g00197 1189 SUPERFAMILY RNI-like 422 783 - -
Spst1g00197 1189 ProSiteProfiles Leucine-rich repeat profile. 755 777 IPR001611 GO:0005515
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 154 249 IPR032675 -
Spst1g00197 1189 FunFam Probable leucine-rich repeat receptor-like protein kinase At5g63930 336 434 - -
Spst1g00197 1189 Pfam Protein kinase domain 905 1176 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00197 1189 SUPERFAMILY RNI-like 86 384 - -
Spst1g00197 1189 FunFam MDIS1-interacting receptor like kinase 2 983 1183 - -
Spst1g00197 1189 FunFam Nuclear pore complex protein NUP107 40 196 - -
Spst1g00197 1189 FunFam Leucine-rich repeat receptor protein kinase MSP1 867 982 - -
Spst1g00197 1189 PRINTS Leucine-rich repeat signature 732 745 - -
Spst1g00197 1189 PRINTS Leucine-rich repeat signature 753 766 - -
Spst1g00197 1189 Gene3D Transferase(Phosphotransferase) domain 1 983 1183 - -
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 511 600 IPR032675 -
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 601 697 IPR032675 -
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 250 341 IPR032675 -
Spst1g00197 1189 Gene3D Ribonuclease Inhibitor 698 823 IPR032675 -
Spst1g00197 1189 FunFam Leucine-rich repeat receptor protein kinase EMS1 197 293 - -
Spst1g00197 1189 Pfam Leucine rich repeat N-terminal domain 42 79 IPR013210 -
Spst1g00197 1189 SMART LRR_typ_2 465 489 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 130 154 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 513 537 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 729 752 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 226 250 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 393 417 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 753 775 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 106 129 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 345 369 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 776 799 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 609 633 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 273 297 IPR003591 -
Spst1g00197 1189 SMART LRR_typ_2 681 704 IPR003591 -
Spst1g00197 1189 Gene3D Phosphorylase Kinase; domain 1 863 982 - -
Spst1g00197 1189 SMART LRR_sd22_2 369 395 - -
Spst1g00197 1189 SMART LRR_sd22_2 465 491 - -
Spst1g00197 1189 SMART LRR_sd22_2 753 778 - -
Spst1g00197 1189 SMART LRR_sd22_2 130 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00197 Spst-Chr1 2815128 2820650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00197 338 797 Receptor kinase-like Gene Family AT4G08850 35.041 2.08e-61 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00197 Pkinase 3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00197 - - gmx:106794215 1557.35