Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00196 ATGGTGATCATATTCCGAACGCTTGTGTCCATGAAGTTCCAACCTCTTTGGCTGCTTCTTCTGATGATCTTCTGTGCATTTCCCCGTCATGATGCTGCTAATTCTTCTGATGTTGCTTCTGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGCCTTGATAACAACAGTCAAGCTTCTCTCTCTTCATGGAATGGCAATAATCCTTGCAACTGGCTGGGAATAGCATGTGATGAGTCCAATTCGGTTTCTAACATAAATCTTACACGTGTTGGATTAAGAGGTACACTTCAAAGTTTTAACTTTTCATTACTTCCAAACATTCTCATTCTGAATATGAGTTACAATTCCTTGTCTGGAAGCATTCCTTCACAAATTGAAGAGTTGTCTAATCTCAACACGCTTGATTTATCCACTAATAAACTCTTTGGTAGCATTCCAAATACCATTTCTAATCTGACCAAACTAAAATATCTGAATCTCAGTGTCAATGGTCTCTCTGGTCCTATTCCTACTGATGTGGGTAAGCTCCAGTCTCTTCTTACATTTGATATATTTACCAATAACCTCTCTGGACCAATCCCACCTTCCTTAGGTACCTTGCCTCTTTTGGAATCCATTCATCTCTTTGAAAATAAACTCTCTGGACCCATTCCTGCCTCTCTTGGAAATTTGTCCAGGCTTACTATGTTATCTTTATCATCAAATCAACTCACCGGATCCATTCCTCCCCATATTGGAAATTTATCAAACGCCAAGGTCATATGTTTTATTGGAAATGAACTTAGTGGTGAGATTCCAATAGAAATAGAGAAGCTTACTGGTCTGGAATGTTTGCAACTAGCTGATAATAATTTCATTGGCCAAATACCCCAGAACATTTGCCTCGGTGGAAACATGAAATACTTCACCGCTGGTAATAACAATTTCACGGGCCCAATTCCAGAGAGTTTGAAGAATTGCTACAGCCTCAAGAGACTCAGGCTTCAGCAAAACCTTCTAACTGGGGATATAACAAACTTTTTCGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATAATTTTCACGGTAATCTTTCACCTAGATGGGGAAAGTTCCGTAGCCTCACAAGCCTCATGATTGCCAACAATAAATTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAGCTAAGTTACAGGTGCTTGATCTGTCCTCAAACCATCTTACAGGAAGCATCCCACAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCACTTAGCAACAACAATCTTTCAGGAAATGTTCCCATGGAAATAGAATCACTGCACGAACTTAAATTTTTGGAGCTTGGGTCAAATTATTTGACGGGCTTAATCCAAAAAGAACTTGGAAATTTGCACAATTTATTGAGCATGAATCTGAGGCAGAATAAATTTGAGGGAAGTATTCCTTTCGAGCTCGGAAATTTGCAATATCTCTCAAGTCTTGATCTCAGTGGAAATATGTTGAGTGGAACATTACCACCAACGCTTGGTGGAATAAAAGGCTTAGAAACATTGAATCTATCGCACAATAGTCTTTCAGGTGGTCTCTCTAGCTTAGATGATATGATAAGCTTGACATCTATTGATATATCATACAACCAGTTTGAGGGGCCAGTTCCTGACAATCAAGTCTTCCACAATGTTAAAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGCAATGTCACTGGCTTGGAGCCTTGCCCAAGTGAAAATCCTAATGATCATAATCATACGACAAGGAAAGTCCTGATAACAGTTTTACCCCTTACTTTGGCCATTCTAATGGTTGCACTATTTGTTTTGGGAGTCTCCTATCATTCACGCCGAACTTCAAGAAAAGAAACTGACCAGGTTACAAGTTTACGATCTGCCAGCATATTTCCAATATGGAGTTTTGGAGGCAAAGTTATGTTTGAGAATATTGTTGAGGCCACCGAATATTTTGATGACAAATATCTCATTGGTGTTGGAGGGCAAGGAGCTGTTTACAAAGCAATATTAGCTACAGGTCAAGTTGTTGCTGTCAAGAAGCTCCATTCAGTTTCAAATGAAGAAATGATCAACCACAAGGCTTTCACCAGTGAGATCCAAGCTTTGACAGAAATTAAACATCGTAACATTGTAAAGTTGTATGGGTTTTGTTCGCACTCACAATACTCATTTTTGGTGTGTGAATTCCTGGAAAGGGGCGATCTGAAAAAGATTTTGAAGGATGACGATCAGGCAGCTGCTTTTGATTGGAATAAAAGGGTGCATGTTGTTAAAGATGTAGCAAATGCTTTATGCTACATGCACCACGATTGCACACCTCCAATTGTTCATCGTGATATATCAAGCAAAAATGTTCTTCTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAACTTCTTGATTATAATTCATCCAATTGGACATCATTTGCAGGAACCTTTGGATATGCTGCTCCAGAACTTGCATACACAATGGAAGTAAACGAGAAATGTGATGTGTATAGTTTCGGGGTGTTGGCATTGGAAATATTATTTGGAAGGCACCCGGGTGATGTTGCATCTTTATCAATTGGGATCACCTCAACATTTGATCAAATGGCATTGATGGATAAGCTGGATGAACGTCTCCCTGATCCAACTAGTTCTACTGTCAAAGAGCTGGTTTCCATTGTGAAGATAGCAATTGCTTGCTTGACTGAAAGTCCACGATCTCGCCCAACCATGGAGCTTGTCGTCAAGGAGCTTGCAATGTCGAGGTCGTCTTCAATGTCAAGCACAGAGCTGAAAGACTTAATACGCTAA 2850 0.3975 MVIIFRTLVSMKFQPLWLLLLMIFCAFPRHDAANSSDVASEANALLKWKASLDNNSQASLSSWNGNNPCNWLGIACDESNSVSNINLTRVGLRGTLQSFNFSLLPNILILNMSYNSLSGSIPSQIEELSNLNTLDLSTNKLFGSIPNTISNLTKLKYLNLSVNGLSGPIPTDVGKLQSLLTFDIFTNNLSGPIPPSLGTLPLLESIHLFENKLSGPIPASLGNLSRLTMLSLSSNQLTGSIPPHIGNLSNAKVICFIGNELSGEIPIEIEKLTGLECLQLADNNFIGQIPQNICLGGNMKYFTAGNNNFTGPIPESLKNCYSLKRLRLQQNLLTGDITNFFDVLPNLNYIDLSENNFHGNLSPRWGKFRSLTSLMIANNKLSGVIPPELGGAAKLQVLDLSSNHLTGSIPQDLCNLTLLFDLSLSNNNLSGNVPMEIESLHELKFLELGSNYLTGLIQKELGNLHNLLSMNLRQNKFEGSIPFELGNLQYLSSLDLSGNMLSGTLPPTLGGIKGLETLNLSHNSLSGGLSSLDDMISLTSIDISYNQFEGPVPDNQVFHNVKIEALRNNKGLCGNVTGLEPCPSENPNDHNHTTRKVLITVLPLTLAILMVALFVLGVSYHSRRTSRKETDQVTSLRSASIFPIWSFGGKVMFENIVEATEYFDDKYLIGVGGQGAVYKAILATGQVVAVKKLHSVSNEEMINHKAFTSEIQALTEIKHRNIVKLYGFCSHSQYSFLVCEFLERGDLKKILKDDDQAAAFDWNKRVHVVKDVANALCYMHHDCTPPIVHRDISSKNVLLDSEYVAHVSDFGTAKLLDYNSSNWTSFAGTFGYAAPELAYTMEVNEKCDVYSFGVLALEILFGRHPGDVASLSIGITSTFDQMALMDKLDERLPDPTSSTVKELVSIVKIAIACLTESPRSRPTMELVVKELAMSRSSSMSSTELKDLIR 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00196 949 ProSitePatterns Tyrosine protein kinases specific active-site signature. 787 799 IPR008266 GO:0004672|GO:0006468
Spst1g00196 949 Gene3D Transferase(Phosphotransferase) domain 1 742 947 - -
Spst1g00196 949 SMART LRR_typ_2 368 392 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 440 463 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 272 296 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 224 248 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 488 512 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 128 152 IPR003591 -
Spst1g00196 949 SMART LRR_typ_2 393 416 IPR003591 -
Spst1g00196 949 Gene3D Ribonuclease Inhibitor 39 190 IPR032675 -
Spst1g00196 949 ProSiteProfiles Protein kinase domain profile. 663 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00196 949 PANTHER LEUCINE RICH REPEAT KINASE 2 200 937 - -
Spst1g00196 949 FunFam MDIS1-interacting receptor like kinase 2 742 937 - -
Spst1g00196 949 FunFam MDIS1-interacting receptor like kinase 2 isoform A 193 293 - -
Spst1g00196 949 Pfam Leucine rich repeat N-terminal domain 40 77 IPR013210 -
Spst1g00196 949 SMART LRR_sd22_2 128 154 - -
Spst1g00196 949 SMART LRR_sd22_2 224 250 - -
Spst1g00196 949 SMART LRR_sd22_2 440 466 - -
Spst1g00196 949 SMART LRR_sd22_2 488 517 - -
Spst1g00196 949 SMART LRR_sd22_2 392 418 - -
Spst1g00196 949 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 38 192 - -
Spst1g00196 949 Gene3D Ribonuclease Inhibitor 297 591 IPR032675 -
Spst1g00196 949 Gene3D Ribonuclease Inhibitor 191 296 IPR032675 -
Spst1g00196 949 Pfam Protein kinase domain 665 929 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00196 949 ProSiteProfiles Leucine-rich repeat profile. 394 417 IPR001611 GO:0005515
Spst1g00196 949 PRINTS Leucine-rich repeat signature 491 504 - -
Spst1g00196 949 PRINTS Leucine-rich repeat signature 512 525 - -
Spst1g00196 949 SUPERFAMILY L domain-like 40 336 - -
Spst1g00196 949 SUPERFAMILY RNI-like 241 550 - -
Spst1g00196 949 Gene3D Phosphorylase Kinase; domain 1 621 741 - -
Spst1g00196 949 SUPERFAMILY Protein kinase-like (PK-like) 642 931 IPR011009 -
Spst1g00196 949 Pfam Leucine Rich Repeat 130 152 IPR001611 GO:0005515
Spst1g00196 949 FunFam Leucine-rich repeat receptor protein kinase MSP1 625 741 - -
Spst1g00196 949 FunFam Uncharacterized protein 294 591 - -
Spst1g00196 949 Pfam Leucine rich repeat 490 548 IPR001611 GO:0005515
Spst1g00196 949 Pfam Leucine rich repeat 369 429 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00196 Spst-Chr1 2793554 2796541 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00196 5 835 Receptor kinase-like Gene Family AT4G08850 40.426 0.0 647
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00196 Pkinase 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00196 - - gmx:100784831 1441.79