Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00195 ATGTACGTATTTCTCCTGCACTTGATTGAATCAGAAAACCAGTGGTTGAAAATTTATTTCCCTATGGTGTTCATATTTCCACCTCTTCTGTCCAAGAAGCTCCAACCATTATGGCTGCTTCTTGTAATGTATTTCTGTGCATTTGCAGTGGCCTCTTCTCCTAATCATGATGCTGCTGCTGCTTCTCCTGAGATCGCTTCCGTTGCATCAGAAGCAAATGCTTTGTTGAAGTGGAAAGCCAGTCTTGACAACCACAGTCAAGCTTCTCTCTCTTCATGGACTGGCAATAATCCTTGCAATTGGCTTGGAATTTCATGTGATGACACCAGTTCTGTTTCCACCATAAATCTTACACGTGCTGGATTGAGAGGTATGCTTCATAGTCTTAACTTCTCATTACTTCCAAACATCCTCACTCTAAACATGAGTTACAACACTCTGTCTGGAAGTATTCCTCCTCAGATTGGGAGCTTGTCCAATCTCAGCACTCTTGATTTGTCTACCAATAAGCTCTCTGGTAGCATTCCCAACACCATTGGTAATCTGTCCAAACTAAAATATCTGAATCTTAGTGCCAATGGTCTCTCTGGCTCTATTCCTAATGAAGTGGGAAATCTCCTGTCTCTTCTCACATTTGATATATATACCAACAACCTCTCTGGATCAATCCCACCTTCCTTAGGTAACTTGCCCCGTTTGGAATCCATTCATCTTTTTTCAAATAAACTCTCTGGACCCATTCCTGCCTCTCTTGGAAATTTGTCCAGGCTTACTATGTTATCTTTATCATCAAATCAACTCACCGGATCCATTCCTCCCCATATTGGAAATTTATCAAACGCCAAGGTCATATGTTTTATTGGAAATGAGCTTAGTGGTGAGATTCCAATAGAAATGGAGAAGCTTACTGGTCTGGAATGTTTGCAACTGGCTGATAATAATTTTATAGGCCAAATACCCCAGAACATTTGCCTCGGTGGAAACATGAAATTCTTCACTGCTGGTAATAATAATTTCACAGGCCCAATTCCAGAGAGTTTGAAGAATTGCCACAGCCTTAAAAGACTCAGGCTGCAGCAAAACCATCTAACTGGGGATATAACAAATTTTTTCGATGTACTTCCAAACTTGAACTACATCGATCTGAGTGAAAATAATTTTCATGGTAATCTTTCACCTAGATGGGGAAAGTTCCGTAGCCTCACAAGCCTCATGATTGCCAACAATAAATTGTCAGGTGTTATTCCACCAGAACTAGGTGGGGCAGCTCAATTACAGGTGCTTGATCTGTCCTCAAACCATCTTACAGGAAGCATCCCACAAGATTTATGCAACTTGACCCTCTTGTTTGATCTTTCTATCAGCAACAACAATCTTTCAGGAAATGTTCCCATGGAAATAGAATCACTGCACGAACTTAAATATTTGGAGCTTGGGTCAAATAATTTGACGGGCTCAATCCGAAAACAACTCGGCACTTTGCACAATTTATTGAAAATGAATCTGAGCCAGAATAAATTTGAGGGAAGTATTCCTTTCGAGCTCGGCAATTTGCAATATCTCTCAAGTCTTGATCTCAGTGAAAATATGTTGAGTGGAACATTACCACCAACGCTTGGTGAAATAAAAGGCTTAGAAACATTGAATCTATCGCACAATAGTCTTTCAGGTGGTCTCTCTAGCTTAAATGATATGAGAAGCTTGACGTCTTTTGATATATCATACAACCAGTTTGAGGGGCCAGTTCCTAACAATCAGATCTTCCACAATGTTACAATTGAAGCATTGAGAAATAATAAAGGCTTGTGTGGTAATGTCACTGGTTTGGAGCCTTGCCCAACATTTAGTGGGAAATATCATAATAATATGAAAAGGAGAGTGCTAATAGCAGTTTTACCCCTTACCGTGGCAATTCTAATGCTTGCACTATTTGTTCTTGGAGTCTTCTATCATTTATGTCGAACTTCAACGGAAGAACAAGACGAGACTACAATTTTACGATCTTCAAGCGTATTTCCAATATGGGATTTTGGTGGGAAAATTACATTCGAGAATATTATTGAAGGCACAGAATATTTTGATGACAAACATCTCATTGGAGTTGGAGGGCAAGGATGTGTTTACAAAGCAACGTTGCCTACGGGTGAAGTTGTTGCTGTGAAGAAACTCCATTCAGTTTCTAATGGAGAAATACCCAACATGAAAGCTTTCAAAAGTGAGATCCAAACTTTGACAGAAATTCGACATCGAAACATTGTAAAGTTATTTGGCTTTTGTTCACATTCACAATACTCATTTTTGGTGTGTGAATTCCTGGAGAAGGGCGACCTCAACAAGATTTTGAAGAATGACGAACAAGCAATTGCATTTGATTGGAAGAAAAGGGTGAATGTTGTTAAAGGTGTTGCAGATGCTTTATGCTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGCGATATATCAAGCAAGAATGTTCTTTTGGATTCAGAATATGTAGCTCATGTCTCAGACTTCGGAACAGCTAAGTTTCTTAATCATAATTCATCCAATTGGACCTCATTCGCAGGAACCTTTGGATATGCTGCCCCAGGTTAA 2601 0.3952 MYVFLLHLIESENQWLKIYFPMVFIFPPLLSKKLQPLWLLLVMYFCAFAVASSPNHDAAAASPEIASVASEANALLKWKASLDNHSQASLSSWTGNNPCNWLGISCDDTSSVSTINLTRAGLRGMLHSLNFSLLPNILTLNMSYNTLSGSIPPQIGSLSNLSTLDLSTNKLSGSIPNTIGNLSKLKYLNLSANGLSGSIPNEVGNLLSLLTFDIYTNNLSGSIPPSLGNLPRLESIHLFSNKLSGPIPASLGNLSRLTMLSLSSNQLTGSIPPHIGNLSNAKVICFIGNELSGEIPIEMEKLTGLECLQLADNNFIGQIPQNICLGGNMKFFTAGNNNFTGPIPESLKNCHSLKRLRLQQNHLTGDITNFFDVLPNLNYIDLSENNFHGNLSPRWGKFRSLTSLMIANNKLSGVIPPELGGAAQLQVLDLSSNHLTGSIPQDLCNLTLLFDLSISNNNLSGNVPMEIESLHELKYLELGSNNLTGSIRKQLGTLHNLLKMNLSQNKFEGSIPFELGNLQYLSSLDLSENMLSGTLPPTLGEIKGLETLNLSHNSLSGGLSSLNDMRSLTSFDISYNQFEGPVPNNQIFHNVTIEALRNNKGLCGNVTGLEPCPTFSGKYHNNMKRRVLIAVLPLTVAILMLALFVLGVFYHLCRTSTEEQDETTILRSSSVFPIWDFGGKITFENIIEGTEYFDDKHLIGVGGQGCVYKATLPTGEVVAVKKLHSVSNGEIPNMKAFKSEIQTLTEIRHRNIVKLFGFCSHSQYSFLVCEFLEKGDLNKILKNDEQAIAFDWKKRVNVVKGVADALCYMHHDCSPPIVHRDISSKNVLLDSEYVAHVSDFGTAKFLNHNSSNWTSFAGTFGYAAPG 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00195 866 Gene3D Ribonuclease Inhibitor 218 324 IPR032675 -
Spst1g00195 866 Gene3D Transferase(Phosphotransferase) domain 1 772 866 - -
Spst1g00195 866 SUPERFAMILY L domain-like 70 367 - -
Spst1g00195 866 FunFam Uncharacterized protein 324 621 - -
Spst1g00195 866 SMART LRR_sd22_2 470 496 - -
Spst1g00195 866 SMART LRR_sd22_2 158 184 - -
Spst1g00195 866 SMART LRR_sd22_2 254 280 - -
Spst1g00195 866 PANTHER LEUCINE RICH REPEAT KINASE 2 227 865 - -
Spst1g00195 866 ProSiteProfiles Leucine-rich repeat profile. 424 447 IPR001611 GO:0005515
Spst1g00195 866 ProSiteProfiles Protein kinase domain profile. 693 866 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00195 866 SMART LRR_typ_2 302 326 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 182 206 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 254 278 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 470 494 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 518 542 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 398 422 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 158 181 IPR003591 -
Spst1g00195 866 SMART LRR_typ_2 423 446 IPR003591 -
Spst1g00195 866 SUPERFAMILY Protein kinase-like (PK-like) 669 865 IPR011009 -
Spst1g00195 866 Pfam Leucine rich repeat N-terminal domain 70 107 IPR013210 -
Spst1g00195 866 Gene3D Ribonuclease Inhibitor 67 217 IPR032675 -
Spst1g00195 866 FunFam Leucine-rich repeat receptor protein kinase MSP1 655 771 - -
Spst1g00195 866 SUPERFAMILY RNI-like 297 585 - -
Spst1g00195 866 ProSitePatterns Tyrosine protein kinases specific active-site signature. 817 829 IPR008266 GO:0004672|GO:0006468
Spst1g00195 866 Gene3D Phosphorylase Kinase; domain 1 654 771 - -
Spst1g00195 866 FunFam MDIS1-interacting receptor like kinase 2 isoform A 223 323 - -
Spst1g00195 866 Gene3D Ribonuclease Inhibitor 325 619 IPR032675 -
Spst1g00195 866 Pfam Leucine rich repeat 399 459 IPR001611 GO:0005515
Spst1g00195 866 FunFam Probable leucine-rich repeat receptor-like protein kinase At1g35710 68 222 - -
Spst1g00195 866 Pfam Protein kinase domain 694 865 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00195 866 PRINTS Leucine-rich repeat signature 521 534 - -
Spst1g00195 866 PRINTS Leucine-rich repeat signature 542 555 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00195 Spst-Chr1 2778724 2781324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00195 32 866 Receptor kinase-like Gene Family AT4G08850 40.509 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Spst1g00195 Pkinase 2.1e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00195 - - gmx:100784831 1307.74