Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00194 ATGGAGGCAAATGAAAAATGTGATGTGTATAGTTTTGGGGTCTTGACATTGGAGATATTGTTTGGAAGACACCCTGGTGATATTACATCTTCTTTAATGTTATCATCTTCATCAATTGGTGTGACCTCAACACTTGATCATATGGTATTCATGGATAGACTGGACGAACGTCTTCCTCATCCAACTAGCCCTGATCTGAAGGAGGTGGTATCAATTGTGAAGATAGCAATTTCCTGTTTGACTGAAAGCCCAAGATCTCGTCCTACCATGGAAGAGGTTGTGAAGGAGCTTGTAATGTCAAACTCACCTTTTCTACAACGTACACATGTAGAGCAAAAAGACTGCACATCCTCAACATACTGA 363 0.405 MEANEKCDVYSFGVLTLEILFGRHPGDITSSLMLSSSSIGVTSTLDHMVFMDRLDERLPHPTSPDLKEVVSIVKIAISCLTESPRSRPTMEEVVKELVMSNSPFLQRTHVEQKDCTSSTY 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00194 120 ProSiteProfiles Protein kinase domain profile. 1 105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00194 120 Pfam Protein tyrosine and serine/threonine kinase 3 97 IPR001245 GO:0004672|GO:0006468
Spst1g00194 120 SUPERFAMILY Protein kinase-like (PK-like) 3 104 IPR011009 -
Spst1g00194 120 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
Spst1g00194 120 PANTHER LEUCINE RICH REPEAT KINASE 2 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00194 Spst-Chr1 2778210 2778572 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00194 1 107 Receptor kinase-like Gene Family AT3G28040 37.037 7.69e-14 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-1 Spst1g00194 PK_Tyr_Ser-Thr 2.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00194 - - gmx:100809509 165.622