Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00189 ATGGGAAGACAACCTTGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCCTGGACTATTGAAGAGGATCACAAGCTCATGAACTTTATTCTCAACAATGGCATCCATTGCTGGAGAACGGTTCCTAAATTAGCAGGTCTTCTGAGATGTGGAAAGAGTTGCAGACTCAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTCACAGAAATGGAAGAGGATCAAATAATAGAACTACATTCACTTCTTGGTAACAGATGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAAAGGCTCAAACTTCTTGGTTTGGACCCTGTGACACACAGGCCAACCGAGTCAAAGAAAAATACCGATGAGGGCAAAAATAATACCAATTATCCACAGGCTTCTATTTCCGGAGGGTCTGAAGAAAATGTGGGGAGTGATGGCCCCAAAGAAATTACAAAAACAGAAGGGGAAAGAGAAGAAAACAAGATGACATGGGATGAAACCTCTGAACTTTTAAACAATTTTGAAATCCTATGCTCACAGTTGGACTTGGGATCATGGATGAGTCAAGAAATCAATACTAGTAGTACTAATTCTTTATGCAGTTCATCTGTTTCTATGGATAACAATAGTCACCTTTCTATGGATGAATCCTCTTGCATACAGGAAAACTCGTTACAGAAATGGGTTGATAGTATGGATTCCATTCTCTCATGGGATGGTTTCAACCCTCTTGATCAAGAGATTTTCCTCTCGGAAAATAGGGAATAA 813 0.4022 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIELHSLLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGLDPVTHRPTESKKNTDEGKNNTNYPQASISGGSEENVGSDGPKEITKTEGEREENKMTWDETSELLNNFEILCSQLDLGSWMSQEINTSSTNSLCSSSVSMDNNSHLSMDESSCIQENSLQKWVDSMDSILSWDGFNPLDQEIFLSENRE 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00189 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Spst1g00189 270 MobiDBLite consensus disorder prediction 123 177 - -
Spst1g00189 270 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Spst1g00189 270 CDD SANT 16 61 IPR001005 -
Spst1g00189 270 SMART sant 13 63 IPR001005 -
Spst1g00189 270 SMART sant 66 114 IPR001005 -
Spst1g00189 270 MobiDBLite consensus disorder prediction 138 155 - -
Spst1g00189 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 220 - -
Spst1g00189 270 FunFam MYB transcription factor 68 129 - -
Spst1g00189 270 CDD SANT 70 110 IPR001005 -
Spst1g00189 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Spst1g00189 270 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Spst1g00189 270 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Spst1g00189 270 FunFam MYB transcription factor 11 67 - -
Spst1g00189 270 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Spst1g00189 270 MobiDBLite consensus disorder prediction 160 177 - -
Spst1g00189 270 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Spst1g00189 270 MobiDBLite consensus disorder prediction 123 137 - -
Spst1g00189 270 Gene3D - 11 67 - -
Spst1g00189 270 Gene3D - 69 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00189 Spst-Chr1 2751177 2752198 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00189 1 177 MYB Transcription Factor Family AT5G16600 60.452 5.24e-75 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g00189 Myb_DNA-binding 8.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00189 K09422 - gmx:100783231 469.544