LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00184	ATGGCAGTTAATGGAGAACAAAAACGCACCTCCAGAAACCAAAAGATCCCATTAGCAGATTCCAATGGCCAAAACATGGCCACCCTTTTGAGCCCAGGGTTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGATCGAGATTCCAAGCACAAGAAACGCTCTCTTCTGAACTCCAAATCTCCAGCCACCAACTCATCAAGGAAACGTAGAGCTCGGAGGACTCCACAACAACCAATCCCTGTAATTCTTGATCTTGATTCAGAAGAAACCCCCAGAAAAGAGAGTGGGAGAAAGAAGAAAGAAAAAAAGGCTTGTGTTAATAATGAGGGAAGCAAAGTAGGAGGGGATGGGAATGAATGGAAAGAGAAGAACGCGAGGGTCCCTTCTTCTAGTTCAGCTCTTCCCTGCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAAAAAATGTCTACGATCTGCGGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCCATGGACGATCATGCACTGTGAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTCCCCCAAGAAATTGAGGCAAGAAAAGCAGCTGGCTCCTTGAATGGTCGCCACCAAGCTCAAAATCTGAGTCCAGAAACAGCATTCTATGCTAACCTAAGGAATACAAAAACACAACCTTCTAGTGTGGCATCAAGCAGAAACATGAATTCAAGGAGGAGTGTGGCAACAACATCAACGCAGGTGGATGGTGATGATGCATTGGCTAGGAGGTTGCAGAGAGAAATTGATGAACAAAGCCCGGGAACAACTCGAACTCGGGTTCACACTGGAAGAGTAAGGGAAAGAAGAGGTGTTTCTACTAGCCAAGATGAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAGGAGTTCATCCAAGCTTTTAGGAGGGGGAGCAACCAGGAACAGGGTGTTAGGTTACCTTCATCATCATTAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCCTAGGACTAGTGATAGAAGGAGATAA	1146	0.4625	MAVNGEQKRTSRNQKIPLADSNGQNMATLLSPGFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKKRSLLNSKSPATNSSRKRRARRTPQQPIPVILDLDSEETPRKESGRKKKEKKACVNNEGSKVGGDGNEWKEKNARVPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISHGRSCTVNTVLWNTIQLLFPQEIEARKAAGSLNGRHQAQNLSPETAFYANLRNTKTQPSSVASSRNMNSRRSVATTSTQVDGDDALARRLQREIDEQSPGTTRTRVHTGRVRERRGVSTSQDEDAALALRLQREEFIQAFRRGSNQEQGVRLPSSSLANLRAMASRAMNPRTSDRRR	381

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00184	381	MobiDBLite	consensus disorder prediction	101	122	-	-
	Spst1g00184	381	MobiDBLite	consensus disorder prediction	59	139	-	-
	Spst1g00184	381	MobiDBLite	consensus disorder prediction	300	323	-	-
	Spst1g00184	381	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	104	230	IPR013083	-
	Spst1g00184	381	ProSitePatterns	Zinc finger RING-type signature.	176	185	IPR017907	-
	Spst1g00184	381	MobiDBLite	consensus disorder prediction	1	29	-	-
	Spst1g00184	381	PANTHER	UNCHARACTERIZED	324	373	-	-
	Spst1g00184	381	Pfam	Zinc finger, C3HC4 type (RING finger)	161	199	IPR018957	GO:0046872
	Spst1g00184	381	ProSiteProfiles	Zinc finger RING-type profile.	161	200	IPR001841	-
	Spst1g00184	381	SMART	ring_2	161	199	IPR001841	-
	Spst1g00184	381	MobiDBLite	consensus disorder prediction	259	284	-	-
	Spst1g00184	381	SUPERFAMILY	RING/U-box	153	224	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00184	89	204	C3H Transcription Factor Family	AT5G48655	27.517	5.84e-08	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00184	-		-	gmx:102666585	525.398