Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00184 ATGGCAGTTAATGGAGAACAAAAACGCACCTCCAGAAACCAAAAGATCCCATTAGCAGATTCCAATGGCCAAAACATGGCCACCCTTTTGAGCCCAGGGTTCAAATCTGCTGCTGCTATGGCTGGTTGGGATGAAGAGGCACTGTTATTGGCCAGCCTCATCGTTGAAGACACGCCAGATCGAGATTCCAAGCACAAGAAACGCTCTCTTCTGAACTCCAAATCTCCAGCCACCAACTCATCAAGGAAACGTAGAGCTCGGAGGACTCCACAACAACCAATCCCTGTAATTCTTGATCTTGATTCAGAAGAAACCCCCAGAAAAGAGAGTGGGAGAAAGAAGAAAGAAAAAAAGGCTTGTGTTAATAATGAGGGAAGCAAAGTAGGAGGGGATGGGAATGAATGGAAAGAGAAGAACGCGAGGGTCCCTTCTTCTAGTTCAGCTCTTCCCTGCATTGATAAACTTAGGGACGAGCTTTCCTGTGCTATTTGTTTGGAAATATGCTTTGAGCCAAGTACCACTCCTTGTGGTCACAGCTTCTGTAAAAAATGTCTACGATCTGCGGCAGACAAGTGTGGCAAAAAGTGCCCCAAATGCAGGCAATTAATAAGCCATGGACGATCATGCACTGTGAACACAGTCCTCTGGAACACAATCCAGCTCCTGTTCCCCCAAGAAATTGAGGCAAGAAAAGCAGCTGGCTCCTTGAATGGTCGCCACCAAGCTCAAAATCTGAGTCCAGAAACAGCATTCTATGCTAACCTAAGGAATACAAAAACACAACCTTCTAGTGTGGCATCAAGCAGAAACATGAATTCAAGGAGGAGTGTGGCAACAACATCAACGCAGGTGGATGGTGATGATGCATTGGCTAGGAGGTTGCAGAGAGAAATTGATGAACAAAGCCCGGGAACAACTCGAACTCGGGTTCACACTGGAAGAGTAAGGGAAAGAAGAGGTGTTTCTACTAGCCAAGATGAGGATGCAGCTTTGGCTCTAAGGTTGCAGAGAGAGGAGTTCATCCAAGCTTTTAGGAGGGGGAGCAACCAGGAACAGGGTGTTAGGTTACCTTCATCATCATTAGCAAATTTGAGGGCTATGGCATCTAGAGCCATGAATCCTAGGACTAGTGATAGAAGGAGATAA 1146 0.4625 MAVNGEQKRTSRNQKIPLADSNGQNMATLLSPGFKSAAAMAGWDEEALLLASLIVEDTPDRDSKHKKRSLLNSKSPATNSSRKRRARRTPQQPIPVILDLDSEETPRKESGRKKKEKKACVNNEGSKVGGDGNEWKEKNARVPSSSSALPCIDKLRDELSCAICLEICFEPSTTPCGHSFCKKCLRSAADKCGKKCPKCRQLISHGRSCTVNTVLWNTIQLLFPQEIEARKAAGSLNGRHQAQNLSPETAFYANLRNTKTQPSSVASSRNMNSRRSVATTSTQVDGDDALARRLQREIDEQSPGTTRTRVHTGRVRERRGVSTSQDEDAALALRLQREEFIQAFRRGSNQEQGVRLPSSSLANLRAMASRAMNPRTSDRRR 381
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00184 381 MobiDBLite consensus disorder prediction 101 122 - -
Spst1g00184 381 MobiDBLite consensus disorder prediction 59 139 - -
Spst1g00184 381 MobiDBLite consensus disorder prediction 300 323 - -
Spst1g00184 381 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 230 IPR013083 -
Spst1g00184 381 ProSitePatterns Zinc finger RING-type signature. 176 185 IPR017907 -
Spst1g00184 381 MobiDBLite consensus disorder prediction 1 29 - -
Spst1g00184 381 PANTHER UNCHARACTERIZED 324 373 - -
Spst1g00184 381 Pfam Zinc finger, C3HC4 type (RING finger) 161 199 IPR018957 GO:0046872
Spst1g00184 381 ProSiteProfiles Zinc finger RING-type profile. 161 200 IPR001841 -
Spst1g00184 381 SMART ring_2 161 199 IPR001841 -
Spst1g00184 381 MobiDBLite consensus disorder prediction 259 284 - -
Spst1g00184 381 SUPERFAMILY RING/U-box 153 224 - -
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00184 89 204 C3H Transcription Factor Family AT5G48655 27.517 5.84e-08 50.8
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00184 - - gmx:102666585 525.398