Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00181 ATGGCTACGCTTGCTGATTCTTTTCTCGCCGACCTCGATGAACTCTCTGATAATGAGGCCGAAATTCCGGAGGATAACGATGTCGATGCTGCAGACATGGAAGAGGATGTTGATGGTGACTTGGCTGACCTAGAAAACCTCAACTATGATGACTTGGACAGTGTTTCCAAGTTGCAGAAAACCCAGAGGTACATTGATATTATACAGAAAGTGGAAGAGGCCCTTAAAAAGGGGTCGGATGTCTCGACTCAGGGAGTGGACTTAGAAGATGACCCTGAATACCAGCTGATTGTGGATTGCAATGCACTGTCAGTTGACATTGAGAATGAAATTGTTATAATCCACAATTTTATCCGTGACAAATATCGATTGAAATTTCCAGAGCTTGAATCCCTGGTGCATCACCCGATTGATTATGCACGGGTTGTTAAGAAGATAGGAAATGAAATGGATCTGACACTTGTTGATTTAGAAGGGCTTTTACCCTCTGCCATTATCATGGTTGTCTCTGTTACTGCTTCAACTACAACTGGCAAGCCTCTTCCAGAAGAAGTCCTTAGTAAGACTGTTGAGGCTTGTGATCGAGCACTTGATCTTGATTCAGCAAAGAAGAATGTTCTGGATTTCGTTGAGAGTAGAATGGGCTACATTGCACCTAATCTCTCTGCTATAGTTGGGAGTGCTGTTGCAGCTAAACTCATGGGCACAGCTGGTGGTTTAGCATCTCTAGCAAAGATGCCTGCTTGTAATGTACAGCTTCTTGGTGCCAAGAAAAAGAATCTTGCTGGTTTCTCCACGGCAACATCTCAATTTCGTGTAGGTTACGTTGAGCAAACAGAAATATTTCAGACTACTCCTCCATCTCTAAGGATGCGAGCATGTCGACTCTTGGCTGCCAAGTCTACACTTGCAGCACGTGTAGATTCAATACGTGGGGATCCATCTGGAAACACTGGAAGGGCTTTCAAGGATGAGATTCACAAAAAAATTGAGAAGTGGCAAGAGCCCCCTCCTGCAAAGCAACCAAAACCACTTCCAGTTCCTGATTCAGAGCCTAAAAAGAAGAGAGGTGGTCGTCGGCTTAGGAAAATGAAGGAAAGGTATGCAATAACAGACATGAGGAAGTTAGCCAATAGGATGCAATTTGGAGTACCAGAAGAGAGTTCACTAGGAGATGGTCTGGGTGAGGGCTATGGAATGCTTGGTCAGGCTGGCAGTGGCAAACTACGCGTGTCTGTTGGTCAAAGCAAACTTGCTGCAAAAGTTGCTAAAAGATTCAAGGAAAAGAATTATGGTAGCAGTGGTGCTACATCTGGTTTGACATCAAGTCTTGCTTTCACACCAGTGCAGAATGACATTTGTGCCCTTATCTTCCCCATGTCTAGGCAGTTACCATTCACAAGAAATTACTGGTGGATATTCCCCTTCAACTCATCTCTTGCTCATGACTTTCCTACCACACGGAAGCCTTCAAGTAAAATGAATATTGAGCCTTTGGTTAAGTTGTTGCAAACAATTGCCCTAGTTTTCTCAAGTATGCTCATGCACACCAACTCGGTAGTGGAACTCAAAGCACCTACTTCTCTGAAACAGGAACATTTTCAAAGATCAAGAGGACATGAAACCGTGCATGAATTCAAATTCTCATTCAGTCCCCCTGACAATTCTTGGTGGACATGCCTAGAGACTGTTGATGCTGATGGATATTTCTTGATAGTTCACGTTGATTTTTGTCTTGGTGCACGTGCGAATTATCGTGTTCGTTCTGTCCATCGATATTATTGTGGTGTTTCAATGGAAACTTCTAGTGGTGATGTTAGTAAAGGTTTAAAGAGTGGTGCTATGGAGAAACAACTTGTTCAGGATAGGATTACAAGTGAAGTGGACAACAATCTTGACGATGATTTAGGGCTTAGAAGGGCTACCTACAAGTTTTCCACCGATATGGACACTGAAGCTGCCACCAAGATGGGTCAGTTTCCTAAGCTTAATGTCAATGCGGTGAAAGAAAGAGTTGGGCGAGAGATCCGTGTTTTTGAAACATTTGTCTCTTCATCATCAAATGCTGCGATATCCAATGAAGAGGTGACTGATGACTTCTATGAGTTTACTGCTGAAGATTATTACAGACTTTTGGCTGCTAAGAAGGAAGATAAATTCTTAAAGACTCGAAAAATCCGAGAAGCAGAACAGGCAGCTCGTAGATCAGAAATGACCAAGGCTGTAATCAGAGTTCGCTTCCCAGATAATCACACATTGGAGACTACTTTCCACCCATCAGAAACCGTCCAGAGTTTAATTGATGTCCTGACTAAAGTTATTTCACTGCCAGAGCAGCCATTCTATCTATATACTACTCCGCCTAAGAAGGTGATGAAAGACATGTCTCAGAATTTTTATAATACTGGCTTTTGCCCTGGTGCCATTGTGTACTTCTCATACGATGTCCCAAAAGATAGCACTGGTCCTTACCTTCAAGAAGAGATCTTGTCTTTGAAGGAATTGCATCCTGCTAATGATCAAGGCCAACAATCTGAGCCTGTAGAACAATCAGAACCAGAACCTGCTGTGGCAGCAAATCCTCCTCCTCCTGTTGAACAACGCAAACCTGCTGAGAAGAAGCTTGTTAAACCAAAGTGGTTAAAAATGTGA 2652 0.4302 MATLADSFLADLDELSDNEAEIPEDNDVDAADMEEDVDGDLADLENLNYDDLDSVSKLQKTQRYIDIIQKVEEALKKGSDVSTQGVDLEDDPEYQLIVDCNALSVDIENEIVIIHNFIRDKYRLKFPELESLVHHPIDYARVVKKIGNEMDLTLVDLEGLLPSAIIMVVSVTASTTTGKPLPEEVLSKTVEACDRALDLDSAKKNVLDFVESRMGYIAPNLSAIVGSAVAAKLMGTAGGLASLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYVEQTEIFQTTPPSLRMRACRLLAAKSTLAARVDSIRGDPSGNTGRAFKDEIHKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRRLRKMKERYAITDMRKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQSKLAAKVAKRFKEKNYGSSGATSGLTSSLAFTPVQNDICALIFPMSRQLPFTRNYWWIFPFNSSLAHDFPTTRKPSSKMNIEPLVKLLQTIALVFSSMLMHTNSVVELKAPTSLKQEHFQRSRGHETVHEFKFSFSPPDNSWWTCLETVDADGYFLIVHVDFCLGARANYRVRSVHRYYCGVSMETSSGDVSKGLKSGAMEKQLVQDRITSEVDNNLDDDLGLRRATYKFSTDMDTEAATKMGQFPKLNVNAVKERVGREIRVFETFVSSSSNAAISNEEVTDDFYEFTAEDYYRLLAAKKEDKFLKTRKIREAEQAARRSEMTKAVIRVRFPDNHTLETTFHPSETVQSLIDVLTKVISLPEQPFYLYTTPPKKVMKDMSQNFYNTGFCPGAIVYFSYDVPKDSTGPYLQEEILSLKELHPANDQGQQSEPVEQSEPEPAVAANPPPPVEQRKPAEKKLVKPKWLKM 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00181 883 SUPERFAMILY Nop domain 89 335 IPR036070 -
Spst1g00181 883 PANTHER PRE-MRNA SPLICING FACTOR PRP31 1 451 IPR027105 GO:0000244|GO:0000398|GO:0046540
Spst1g00181 883 Gene3D Nop domain 218 343 IPR042239 -
Spst1g00181 883 CDD UBX2_UBXN9 741 814 - -
Spst1g00181 883 Gene3D - 79 217 - -
Spst1g00181 883 MobiDBLite consensus disorder prediction 14 33 - -
Spst1g00181 883 Gene3D - 730 812 - -
Spst1g00181 883 SMART NOSIC_2 96 148 IPR012976 -
Spst1g00181 883 FunFam U4/U6 small nuclear ribonucleoprotein Prp31 218 343 - -
Spst1g00181 883 MobiDBLite consensus disorder prediction 835 883 - -
Spst1g00181 883 MobiDBLite consensus disorder prediction 331 361 - -
Spst1g00181 883 Pfam snoRNA binding domain, fibrillarin 104 332 IPR002687 -
Spst1g00181 883 Pfam Prp31 C terminal domain 340 451 IPR019175 -
Spst1g00181 883 SUPERFAMILY Ubiquitin-like 714 812 IPR029071 -
Spst1g00181 883 ProSiteProfiles Nop domain profile. 217 335 IPR002687 -
Spst1g00181 883 Pfam UBX domain 739 796 IPR001012 GO:0005515
Spst1g00181 883 ProSiteProfiles UBX domain profile. 736 812 IPR001012 GO:0005515
Spst1g00181 883 FunFam U4/U6 small nuclear ribonucleoprotein PRP31 79 217 - -
Spst1g00181 883 MobiDBLite consensus disorder prediction 867 883 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00181 670 769 C2H2 Transcription Factor Family AT2G01650 37.500 1.31e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00181 K12844 - gmx:100792415 797.349