Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00170 ATGTCACTCATTAAATGCTTCTTTCTCCTGCAACTGTTAACATGGTCAAGGGTGCTTCTGGCTCATGAAACAAGTCATTGCTCAAGCTCCATTAATATGAGCATAGGTGCTGTGCTTGATTTAAGTTCACTAATTGGAAAACATCAGAAGGTAGCCATGGAAATTGCACTCCATGACTTCAATCGGTTGAATTGCTCCAAGCTGGATTTAAAGATCAGAAATTTCAATGGGAATTCAGCTCAAGCAGTTGCTACTGGCGACAATTTCCGAGCATCACTAAGAGCTATGGACCTGGCCCTAAGCAAGGAAGTGTTAGCCATCATAGGTACAATAGCACACAATGAAGCAACTCTGGCAAGTGAACTTAACGACAACATAAAAAATATTCCTATATTGTCTCTAATTTCACCTGTAGCCAGATCAGAGCAAGTATCACCTCTATTGCCAAATTTCATCCAAGTGGGATATAATATCATCCTTCACATGCAATGCATTGCAGCCATTGTAGGAGAATTTGGATGGAGAAAGGTGACAGCAATCTATGAACTTGATAGCAAGTTTTCCTCTGATCCAGGGATGCTACTCAACCTCTCCTATTCTCTTAGACTTGTTGGTTCTGAGATTGTCAATCATGTAGCTTTCCCTTCCTTTGTCTCTCTATCAGACCCAAATTCTGCCATTGAAAATGAGCTTAATAGGCTAAAAAGCAAGAGTAACAGGGTGTTCTTGATTGTGCAATCTTCTTTAGAGCTGGCTAGCCTACTGTTTGAGAAAGCAATGCAAATGGATCTAATGGGAAAGGGTTCTGTGTGGATTATCCCAGATGGGGTTGCTGGTCTTCTTGATTCAGTTAACTTGTCTGCTATCCGTAACATGCAAGGAGTTATTGGATTTAAGACACACTTCTTGGAAACAAGCAAGGCATTTAAAAGGTTTAAATTCAAATTTCGCAGAAGGTTTTTGTTGGAGTTCCCTGAAGAAGAGAACAACAACCCAAGTTCCTTTGCAGTTCAATCGTATAAAGCAACCTGGGAAGTTGCTCGAGCTGCAAGGGAATCTCAAGGGAATTTAACCCTTGAACAGTTATTAAAAAGTAATATCTACAGGAATGGAAAATTACGGCAATCACCTACCCTCAGTATAATTAATGTGATAGGTAAAAGTTACAGAGAGTTGGCATTATGGTCTCCAGCACTAGGTTTCTCCCAAAGCTTTGTTACACAACAGCTGACAAAGATGATGAACACAGCTAGTGCTTCCAGTGGAGTTTTGAGTACAGTTTATTGGCCTGGAGGTATACAATTTGTTCCTAAGGGATGGATTCACAGCACCGAAGAGAGGACATTGCGAATAGGAGTGCCTGCAAAAGGTGTATTTACTGATTTCGTGAATGTAAAATATGGTATGAACAGGAATGAAACTTCTGTTACCGGATTCTCAATAGATGTCTTTAAAGCAGCCGTTGATAATTTGCCTCATGATTTGGTATTCTCGTTTGTTCCGTTCAATGGATCTTATGATGAGTTGGTAGAACAAGTCTACAATAAGACATTGGATGCTGCTGTCGGGGATACATCAATAACGGCATATAGATATCATTTAGTTGACTTCTCACAACCGTATGTTGAATAG 1632 0.4007 MSLIKCFFLLQLLTWSRVLLAHETSHCSSSINMSIGAVLDLSSLIGKHQKVAMEIALHDFNRLNCSKLDLKIRNFNGNSAQAVATGDNFRASLRAMDLALSKEVLAIIGTIAHNEATLASELNDNIKNIPILSLISPVARSEQVSPLLPNFIQVGYNIILHMQCIAAIVGEFGWRKVTAIYELDSKFSSDPGMLLNLSYSLRLVGSEIVNHVAFPSFVSLSDPNSAIENELNRLKSKSNRVFLIVQSSLELASLLFEKAMQMDLMGKGSVWIIPDGVAGLLDSVNLSAIRNMQGVIGFKTHFLETSKAFKRFKFKFRRRFLLEFPEEENNNPSSFAVQSYKATWEVARAARESQGNLTLEQLLKSNIYRNGKLRQSPTLSIINVIGKSYRELALWSPALGFSQSFVTQQLTKMMNTASASSGVLSTVYWPGGIQFVPKGWIHSTEERTLRIGVPAKGVFTDFVNVKYGMNRNETSVTGFSIDVFKAAVDNLPHDLVFSFVPFNGSYDELVEQVYNKTLDAAVGDTSITAYRYHLVDFSQPYVE 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00170 543 Pfam Receptor family ligand binding region 50 357 IPR001828 -
Spst1g00170 543 Pfam Bacterial extracellular solute-binding proteins, family 3 470 542 IPR001638 -
Spst1g00170 543 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 543 IPR015683 -
Spst1g00170 543 Gene3D - 162 332 - -
Spst1g00170 543 FunFam Glutamate receptor 161 330 - -
Spst1g00170 543 Gene3D - 441 543 - -
Spst1g00170 543 SUPERFAMILY Periplasmic binding protein-like I 32 440 IPR028082 -
Spst1g00170 543 Gene3D - 24 161 - -
Spst1g00170 543 SUPERFAMILY Periplasmic binding protein-like II 424 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00170 Spst-Chr1 2482987 2487595 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00170 95 543 Ion Channels AT5G11210 32.866 4.58e-62 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00170 - - gmx:100778941 778.859