LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00169	ATGGATTTTTCTAGAAGCCTTTACCAAAGAGATGTGGTTGATAATGACAGCATTGCATATTTTTGTGGGATTTATCATTTGGTTGATCGAAAGGCAACAGGAGAACCAATTAGAAGCCCATTGGCTCGAACTGTGCTGGCACCGTGGTTATTCGTGATCCTCATTGCAACTAGTACTTTCACAGCAAGTTTGACTTCCATGATGACTGTATCACAAATAGAACCATCTGTGTTAGATATCCAGACTCTACAGAAAAGAAATTCTCCAGTTGGTTGCAATGGAAATTCGTTCATTGTGAAGTATTTGATTGAGGTACAAAATTTCAAGCCTGAGAACATTAGGAAAATTAACTCTATAGATGATTACCCTGATGCCTTTCAGAACAAGGATATCGAAGCCGCTTTCTTTATTGTACCTCACGCTAAGGTGTTTTTGGCGAAGTACTCATGCAGGGGATTAATCAAAGCAGGGAACACTTTCAGGCTTGGTGGCTTAGGTTTTGTGGGTCTCTCTCCCCTTATTCTCACCATTTTATTACAGGTATTTCCCAAGGGTTCCACTCTGGCTACTGACATATCCGAAGCATTGCTTAAAGTGATAGAGAGTGGAGAAACCAAACAACTAGAAGAAGATATGCTAAGGGTAGGAGGCAATACCAGTTGTTCTCCTTTAGAGAGCAAGGCAAAAGATAGCTCATCGACAGGAGTTCAGCCTTTCCGTGGCCTGTTTTACATCTGTTCTATTGTTGCTATTCTGGCATTGTTATATAATATGATTTGTTTGTCGATGAATAATGTAGAAACCTTCACCAGCTACATACATGTAAGATTGACGCAATTAAGGAGAATATGGAGACGCACAAGCACAGCTTTTGCTGGGAGCCATTCAAGTCTCCAATTAGGAAGTGTGAGAACTGCCACAGTTACAAGAAATGCAGAGGACACAATCATTGATAGTCAGCAAAGCCCAGTGGTTATAGATGTGATATTGAGTGCTAATGCTTCGTGA	1008	0.4067	MDFSRSLYQRDVVDNDSIAYFCGIYHLVDRKATGEPIRSPLARTVLAPWLFVILIATSTFTASLTSMMTVSQIEPSVLDIQTLQKRNSPVGCNGNSFIVKYLIEVQNFKPENIRKINSIDDYPDAFQNKDIEAAFFIVPHAKVFLAKYSCRGLIKAGNTFRLGGLGFVGLSPLILTILLQVFPKGSTLATDISEALLKVIESGETKQLEEDMLRVGGNTSCSPLESKAKDSSSTGVQPFRGLFYICSIVAILALLYNMICLSMNNVETFTSYIHVRLTQLRRIWRRTSTAFAGSHSSLQLGSVRTATVTRNAEDTIIDSQQSPVVIDVILSANAS	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Spst1g00169	335	Pfam	Ligand-gated ion channel	33	248	IPR001320	GO:0015276\|GO:0016020
	Spst1g00169	335	SUPERFAMILY	Periplasmic binding protein-like II	57	210	-	-
	Spst1g00169	335	Gene3D	-	15	117	-	-
	Spst1g00169	335	PANTHER	IONOTROPIC GLUTAMATE RECEPTOR	37	262	IPR015683	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00169	Spst-Chr1	2481214	2482939	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00169	39	255	Ion Channels	AT2G17260	33.028	1.72e-26	108

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00169	-		-	gmx:100778941	436.802