Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00152 ATGTTGTTACCCAAAAAGGAAGTAGCAGGATGTGCTTTAGCAATGAAGATCATGGCCTCTTCTAGCTACTCTAACTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCGGATTGCATTTTTGCCCCATATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCCAGCAACGTGAGCAAACTTCTGAATGAAGTCCAACCCCACCAGAGGGAAGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCAAGGATAAAAGATCCAGTTTATGGTTGTGTTGGAGCCATCTCAGTGCTCCAAAGGCAAGTGATTAGGCTCCAAAAGGAACTCGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTCAAGATGGGAGAAGAATGGGTGAAGGGGGAGGTTCCTCTCTTGGTCAATCTCCTGGTTATTACTACCCTTGTCCTTGGAACAATGATCCACTTGGGGATGGCTACCACAGAGGTGACAATAATATGTGA 540 0.4611 MLLPKKEVAGCALAMKIMASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTQDGRRMGEGGGSSLGQSPGYYYPCPWNNDPLGDGYHRGDNNM 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00152 179 Pfam Lateral organ boundaries (LOB) domain 27 123 IPR004883 -
Spst1g00152 179 Coils Coil 106 126 - -
Spst1g00152 179 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 25 133 - -
Spst1g00152 179 ProSiteProfiles LOB domain profile. 26 127 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00152 Spst-Chr1 2323759 2324774 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00152 12 130 AS2 family AT3G27650 80.672 2.15e-70 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst1g00152 LOB 1.1e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00152 - - gmx:100306630 344.354