Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00145 ATGAGCCAGTGTGTTCCCAGCTGGGACGTCGACGACAACCCACCACCCTCCAGACTCTCTCTTCGATCCAACTCCACTTCCACTGCCCCTGATGTCCCCATGTTAGACTACGAGGTTGCGGAGCTGACATGGGAAAATGGTCAACTTTCTATGCATGGCTTAGGGCTACCGCGTGTGCCGGTGAAGCCCCCCACAAGCGCCGGGACCAAGTACACATGGGAGAAACCTCGCGCCAGTGGCACCTTGGAATCCATAGTGAACCAAGCCACGAGCTTGCCGCACCGCGGAAAGCCAACGCTGAACGGAGACGGCGGCGTGTATGGGAACTTCGTGGTGCCGTGGTTCGACCCTGACGGGAGTGCCACGGCGGCGAACACGGTGACGATGGACGCATTGGTGCCGTGCACGAAGCGGGAGCAGAGAAAGCAGGGCATGGAGTCGGTTCCCAGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCGTGCTGCGGCAACAAGGGCGCGAAGGGGCAGGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGCGCCACGTTCGGGAGGGATAGCAAGCAGGTGACCCTTGACACGTGCGACAGGGATTTTGGTGTAGCTTTCACTTCCACCTCCATCAACTCCCTCGACAACACCAGCTCCGCTAAGCCCTGCACCAAAACCACCACCGTCGACGACCATGATTCTGTTTCCCACAGTAAACCAGTGGGTGAAGACGGGGACGAAGAAAAGAAAAAGAGAGGAAACGGAAAATCTTCGGTTTCCACTAAAAGGAGCAGAGCTGCGGCCATACATAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATACTTGAAGCAGTTGCAAGCACAGGTGCAGATGATGAATAGAATCAGCATGTCATCGATGATGCTGCCATTAACCATGCAACAACAGCTTCAAATGTCGATGATGTCTCCAATGGGCATGGGATTAGGGATGGGAATGGGGATGGGGATGGGCATGGGGATGGATATGAACTCCATGAATCGTGCTAACATCCCTGCCATTCCTCCAGTCCTCCACCCTTCTGCCTTCATGCCCATGGCGGCTGCGTCGTGGGATGCCGCTGCTGCCGGAGGCGGTGACCGACTTCAAGGGAATCCGGCCACCGTGATGCCTGATCCTCTGTCCACATTTTTTGGATGCCAATCACAGCCCATGACGATGGATGCCTACAGTAGAATTGCTGCCATGTATCAGCAGCTGCACCAACCTCCAGTTTCTGGTTCAAAGAACTGA 1362 0.5477 MSQCVPSWDVDDNPPPSRLSLRSNSTSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAGTKYTWEKPRASGTLESIVNQATSLPHRGKPTLNGDGGVYGNFVVPWFDPDGSATAANTVTMDALVPCTKREQRKQGMESVPSTCMVGCSTRVGSCCGNKGAKGQEMSGRDQSVSGSATFGRDSKQVTLDTCDRDFGVAFTSTSINSLDNTSSAKPCTKTTTVDDHDSVSHSKPVGEDGDEEKKKRGNGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRISMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRANIPAIPPVLHPSAFMPMAAASWDAAAAGGGDRLQGNPATVMPDPLSTFFGCQSQPMTMDAYSRIAAMYQQLHQPPVSGSKN 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00145 453 Pfam Helix-loop-helix DNA-binding domain 271 316 IPR011598 GO:0046983
Spst1g00145 453 FunFam transcription factor UNE10 isoform X1 261 326 - -
Spst1g00145 453 MobiDBLite consensus disorder prediction 17 31 - -
Spst1g00145 453 MobiDBLite consensus disorder prediction 227 256 - -
Spst1g00145 453 SMART finulus 272 321 IPR011598 GO:0046983
Spst1g00145 453 Gene3D - 261 326 IPR036638 GO:0046983
Spst1g00145 453 MobiDBLite consensus disorder prediction 173 189 - -
Spst1g00145 453 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 266 315 IPR011598 GO:0046983
Spst1g00145 453 Coils Coil 272 292 - -
Spst1g00145 453 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 269 328 IPR036638 GO:0046983
Spst1g00145 453 MobiDBLite consensus disorder prediction 1 31 - -
Spst1g00145 453 MobiDBLite consensus disorder prediction 168 189 - -
Spst1g00145 453 MobiDBLite consensus disorder prediction 216 284 - -
Spst1g00145 453 CDD bHLH_AtPIF_like 266 331 IPR047265 -
Spst1g00145 453 MobiDBLite consensus disorder prediction 269 284 - -
Spst1g00145 453 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 39 447 IPR031066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00145 Spst-Chr1 2251747 2256602 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00145 1 434 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.708 1.34e-104 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst1g00145 HLH 6.9e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00145 - - vra:106780284 713.375