Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00140 ATGGACAAGCACAAGTGCAAGCTGTGCTTCCGGAGCTTCTCCAATGGCAGAGCCTTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCCAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAGGCCGAATCAGCTTCTTCTTCGTCCTCCTCCTCATCCGATGATGACGACGACGATGACGGTGACAAGGGTCTCATTTACGGCCTCAGAGAGAACCCCAAGCGAAGCATTCGCCTCGTCGATCCCGAATTCTCCTTCGCAGCTGCAGACACCGGCTCCGCCATCCTCCATGACCGAGAGAGCGAGTCTGAGTCATCCAAAAGCAACCCAACTCGTAAAAGATCCAAAAGGCCATCCAATTATAATAATAATAATAACAACAACAACAACAACAATTATTATTATTATTATAACGATACTAACAACGATACCACCACCACCAGCATCAAGAAGCAAGTTTTCGGCACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGACCACGAACCTGCGAGCTCGGTTTCCGAAGCAACCACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCCAGGGACAAATGGAAGCGACAGAAGGACCAACCGCAATTCGTGGAGGTGGAAGATCAATACGAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGACGAAGCGTTCGAGGAGAGCGAGGAATCCCAAGAGACGACGAAACTGTGCAAGAACCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGCTCGTACCAAGCGTTGGGAGGCCACCGAGCGAGTCACAAAAAGATCAAAGTGAACGTGAAAGTGGACGGTGAAGAAGCGGAAGTTGAACACAGGAAGAAGAGTGGAACGAGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTTTGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACCCATGTTACTGGGTCAGCACCCGCAACAGTCCCATCAAATTCCTCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTCCCGGCTCCTATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTTTCGGATGCAGAATTCGTCAAAACCCGCTAG 1176 0.5111 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEAESASSSSSSSSDDDDDDDGDKGLIYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPSNYNNNNNNNNNNNYYYYYNDTNNDTTTTSIKKQVFGTEHEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRQKDQPQFVEVEDQYEEEEEEEEEEEEEEEDEAFEESEESQETTKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKVDGEEAEVEHRKKSGTSGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPATVPSNSSKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00140 391 MobiDBLite consensus disorder prediction 100 140 - -
Spst1g00140 391 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Spst1g00140 391 ProSitePatterns Zinc finger C2H2 type domain signature. 320 340 IPR013087 -
Spst1g00140 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 345 IPR013087 -
Spst1g00140 391 MobiDBLite consensus disorder prediction 102 118 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 372 391 - -
Spst1g00140 391 ProSitePatterns Zinc finger C2H2 type domain signature. 266 286 IPR013087 -
Spst1g00140 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 264 291 IPR013087 -
Spst1g00140 391 Pfam C2H2-type zinc finger 4 27 - -
Spst1g00140 391 Pfam C2H2-type zinc finger 318 340 - -
Spst1g00140 391 Pfam C2H2-type zinc finger 263 288 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 211 254 - -
Spst1g00140 391 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 390 IPR044303 GO:0006355
Spst1g00140 391 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Spst1g00140 391 SMART c2h2final6 264 286 IPR013087 -
Spst1g00140 391 SMART c2h2final6 4 26 IPR013087 -
Spst1g00140 391 SMART c2h2final6 318 340 IPR013087 -
Spst1g00140 391 MobiDBLite consensus disorder prediction 32 76 - -
Spst1g00140 391 SUPERFAMILY beta-beta-alpha zinc fingers 263 340 IPR036236 -
Spst1g00140 391 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Spst1g00140 391 Coils Coil 217 252 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 220 247 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 44 58 - -
Spst1g00140 391 Gene3D Classic Zinc Finger 261 340 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 122 140 - -
Spst1g00140 391 MobiDBLite consensus disorder prediction 376 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00140 Spst-Chr1 2174840 2176015 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00140 1 377 C2H2 Transcription Factor Family AT3G60580 40.885 5.78e-65 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g00140 zf-C2H2_6 3.1e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00140 - - vra:106780254 632.869