Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00138 ATGCCTGAAGTGGATCAGAATACCGGCAGTGAGCATGAGGTGGAGGAAACAGTTGAGGCAGAAGTACACGGTGGCAAAGAGGCGATTGTTACTCAGAAGTGGCCTAGGTGGCTTGGGGAGAGTGTGTGTCGGATGTTAGTTTCTGCACAAAAGGGTCTTTCTCTAAATGCTGATGGAGGTCTTGGTTTTGGACCTGCTTCTCAATATATGCCACCTCCACAACAACTCGAAAGTTATTATCTAACAGCCGAGATCCCTCATCTAGTTGAAAGACAACCCCATCAAGGAGCGAGTATAAGATTTCTTATTCTTCTAGTTCTTCGAGTATTTCCTGGAATTGATATGCTTCGCCTCAGTCTTCACCCAAAATCTAAGTGTGATGAGGATGTTGAGTATTATAAGAATTTGGCTTCAGGCTATAGCTCCCAAGAGGGATCAAAGATAAAGACAATATTTACATTGTATCAGCTCACAAGTATTATGGCTCTTTCCTTTGATACATTGCAAGGTGGTGATTCTGTTCTGATTACTTTGGAACCAATGTGGGTGTTAGAGGACTTTTGGGGGGCCGGGATGGATGGGGCGGGGATCATTGAGCATATTTTGGGGACCTCATATGTACTTGTCAAGGATTGTTCGATCAAGACTATAATTGTGCCATCTCAATACAGAGGCACAGGTCGCAGGGGTGGTAGATCATTTAGAGGCTATGGTCGTGGTCGATTCAATCACCACCGTGGTAGGGGACGTGGTAGGGGTCCTGGTAGACAGATCTCATCTCATTCTTCTGAAGCCACTATTGCTAATGAACCAGATGTGCCTGCTGCTGATGGGGCCACTTCGGTGATGCAACCATCATCAGTCTCTGGGCAATCATCATTACCTAATCCCGCACAAGTTCCATCTGCACCATTTCAGGCACCACCACGTAAGTTATGGTGTGAAATTTGCAAGGCCGAGTGCAATACTCCAGAAATGTTGGAGCAGCATACAAATGGAAAGCGGCATAGGAAGAACTTGCTAGTTCATGAAGAAGTACAAAGACTCAAAGCTCTAAACGGACAACAGAGTGAAAATATTTTTACTTCTGAATCAAATTTAACAATCCAACCTGAGAAAGTTGAATCTGCGATAAAAGGATTAGCAGAAGAAAAAGTGGGTTCTGAAGCTCCAATTGATAGTCACAATGATGAAACTGAGCTTCAGAATAATGAAGTTGAGGTTAAAACTGAAGAGCCTCAGGAGGAACCTAGAGAAAACTCTTCCATACAAGGACATGGATTCAAGCGTCTGATGAGCGGAGGCAGAGGAGGTAAATATATGAGGAGTGATGATGGCTCAAGAAAACTAGTGGAACCTCGAAAGCCTAAGCATAAGCAGGTTACATCTCTCATATGTGAGTTGTGCAATGTCAAATGTGATTCCCAAGTTGTCTACAATAGTCATTTGACAGGAAAAAAGCACATGTCAAATTTCAAGCGTGTCCATGGTTACCAGGCTTTGAATGGCGAAGCAGGGATCAAACCAATTCAGTCTCCTGATATTAGTACTGTGTCAAATGCAAATAATTTTCCAGTCCAACAAGGTGTTAGTGTCCCACTGGGAACTAGTGATCCACGGAACCTTCTAGCTCAACTCCTTGCGACTGTGCTATCCAATGTCCAAGTACTGCCAATAGCACCACTGTCATGTCCTGTGGCTGATCAGATACAAGCACCAACATTCATGGCTGGATCAAGTCATGAACCTCCGTCTCAAAAGTTGTCAGAAACACAAGTCTCAGATTCCATGGCACATTTTGGGAGAGAAAATCCTGCTGGTAATATAAAAGATAAGATGTCATCTGTGATATTGCAGCTGGATGAGACTGCAGTTTCAAGTAATAATGGTAACCCTGAAATTGTAGGTGGAAGTCCTGCAAAGGAAGAAACGGCGGTGAAACTTCCCCAGGGTAGTGCAGTTATGACACCAGCAGAAAACCCAGTTGCGGCACATAAACAAATACCTTCATAA 2013 0.4377 MPEVDQNTGSEHEVEETVEAEVHGGKEAIVTQKWPRWLGESVCRMLVSAQKGLSLNADGGLGFGPASQYMPPPQQLESYYLTAEIPHLVERQPHQGASIRFLILLVLRVFPGIDMLRLSLHPKSKCDEDVEYYKNLASGYSSQEGSKIKTIFTLYQLTSIMALSFDTLQGGDSVLITLEPMWVLEDFWGAGMDGAGIIEHILGTSYVLVKDCSIKTIIVPSQYRGTGRRGGRSFRGYGRGRFNHHRGRGRGRGPGRQISSHSSEATIANEPDVPAADGATSVMQPSSVSGQSSLPNPAQVPSAPFQAPPRKLWCEICKAECNTPEMLEQHTNGKRHRKNLLVHEEVQRLKALNGQQSENIFTSESNLTIQPEKVESAIKGLAEEKVGSEAPIDSHNDETELQNNEVEVKTEEPQEEPRENSSIQGHGFKRLMSGGRGGKYMRSDDGSRKLVEPRKPKHKQVTSLICELCNVKCDSQVVYNSHLTGKKHMSNFKRVHGYQALNGEAGIKPIQSPDISTVSNANNFPVQQGVSVPLGTSDPRNLLAQLLATVLSNVQVLPIAPLSCPVADQIQAPTFMAGSSHEPPSQKLSETQVSDSMAHFGRENPAGNIKDKMSSVILQLDETAVSSNNGNPEIVGGSPAKEETAVKLPQGSAVMTPAENPVAAHKQIPS 670
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00138 670 MobiDBLite consensus disorder prediction 387 423 - -
Spst1g00138 670 Pfam Zinc-finger of C2H2 type 313 336 - -
Spst1g00138 670 Pfam Zinc-finger of C2H2 type 465 488 - -
Spst1g00138 670 MobiDBLite consensus disorder prediction 441 456 - -
Spst1g00138 670 MobiDBLite consensus disorder prediction 280 300 - -
Spst1g00138 670 MobiDBLite consensus disorder prediction 1 22 - -
Spst1g00138 670 SMART ZnF_U1_5 309 343 IPR003604 GO:0003676|GO:0008270
Spst1g00138 670 SMART ZnF_U1_5 461 495 IPR003604 GO:0003676|GO:0008270
Spst1g00138 670 MobiDBLite consensus disorder prediction 227 306 - -
Spst1g00138 670 SUPERFAMILY beta-beta-alpha zinc fingers 296 340 IPR036236 -
Spst1g00138 670 PANTHER OS06G0651300 PROTEIN-RELATED 205 537 - -
Spst1g00138 670 MobiDBLite consensus disorder prediction 387 456 - -
Spst1g00138 670 SMART c2h2final6 312 336 IPR013087 -
Spst1g00138 670 SMART c2h2final6 464 488 IPR013087 -
Spst1g00138 670 MobiDBLite consensus disorder prediction 234 252 - -
Spst1g00138 670 Gene3D Classic Zinc Finger 447 494 - -
Spst1g00138 670 Gene3D Classic Zinc Finger 302 343 - -
Spst1g00138 670 MobiDBLite consensus disorder prediction 623 670 - -
Spst1g00138 670 SUPERFAMILY beta-beta-alpha zinc fingers 455 495 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00138 Spst-Chr1 2142669 2148018 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Spst1g00138 zf-met 2.7e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00138 - - gmx:102666037 606.675