Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00128 ATGTTCGTTTCTTCCTCATCTCATGTTCCCCGTTGGCTTCAACTCCTCCTCACGGAGAAGTTCTACAACGCTTGCATAATTCACGAAGAGGCAAAGAAGAACGAGAAGAACGTCTATTGCTTGGATTGTTGCATCAGTCTCTGCCCTCACTGTTTGTCCCCTCACCGCTCTCATAGACTCTTGCAGATTAGAAGATATGTGTATCATGATGTTATAAGGTTGGATGACGCTGCAAAATTAATTGACTGCACTTCGGTTCAATCCTACACAACTAACAGTGCAAAAGTGGTATTTTTAAACCAAAGGCCACAGACAAGGAACTTCAGAGGCTCCGGCAATTTCTGCAGCACCTGTGACAGAAGTCTGCAAGACCCATACCACTTCTGCTCCCTTTCTTGCAAGATCAATTATCTCATCAGAACAACGGGTTCTCTCTGCGGTTACCTCTTCGAGTGCAACTACTTGCCGTTACCAGAATCTGGTCTCGACGATGGTCAGATGACCCCTGACTCGGTTCTCGAACCTGCCGGTTCGGCCCGAACCTCGTCCGGTTCTGGAGGGTATGGCGGGGTGGATTGCAGGACCACCCTGGCTTGCACTGCCACCACTGAGATTGTAAGGAAGAAGAGAACCGGCGGCTCTGGTATCCGGCCACCGTGCCGGCCTGCGTGCTCGCCAGTGTCGGAAATCTCGGCGGGTCTAATGAACCGGAGGAAAGGGAACCCGCAGAGGGCCCCACTGTATTGA 747 0.5114 MFVSSSSHVPRWLQLLLTEKFYNACIIHEEAKKNEKNVYCLDCCISLCPHCLSPHRSHRLLQIRRYVYHDVIRLDDAAKLIDCTSVQSYTTNSAKVVFLNQRPQTRNFRGSGNFCSTCDRSLQDPYHFCSLSCKINYLIRTTGSLCGYLFECNYLPLPESGLDDGQMTPDSVLEPAGSARTSSGSGGYGGVDCRTTLACTATTEIVRKKRTGGSGIRPPCRPACSPVSEISAGLMNRRKGNPQRAPLY 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00128 248 ProSiteProfiles Zinc finger B-box type profile. 20 63 IPR000315 GO:0008270
Spst1g00128 248 MobiDBLite consensus disorder prediction 165 187 - -
Spst1g00128 248 Pfam PLATZ transcription factor 64 135 IPR006734 -
Spst1g00128 248 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 7 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00128 Spst-Chr1 2002816 2004472 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Spst1g00128 PLATZ 2.6e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00128 - - pvu:PHAVU_008G142900g 495.352