Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00123 ATGGCATACCTTAACCAGCCATTGATCATAGTAACTTTCCTTTCTCTCTTCTTATGTCTTGCAGCAGTTGAGCCATCTTTGGATCTGCATCAACCCCCAAACCAAAACCAAACAATGGCTTACATAAAGTCCTCTTGCCAAGGAACCAGGTACCCCGATCTGTGCATACGTTGCCTAGCCAGATTTTCTAATTCCACCATAGATGGCCCTCAGCACTTGGTCCATCTTGCCCTTTCGGTGAGCCTCTTCAGGGCACTAAAAACTAGGGGTTACTTGTTCAAAGTGGCCAAGGAACTGGAGGAGTTCAAGAGTGATAGAGTATACCTTACTGTGCAAGATTGTGTAACGCAAATCGATGATAGTGTGGACCAACTTTGCCAAGCCATCAAAGAGCTCCGCATGCTGAACAAACGCACCACCATAGATGACAACTTCTTGTGGCACATAAGCAACGTCGAGACGTGGGTGAGCACTGCCTTAACAGATGCTAGCTACTGTGTTCAATCGTTACCTGGAACAAAGATGAGTAAGAGGACAGCTACTATAAAGGTTAAGGCACAAAATGTTGCAGAGGTCACTAGTAATGCACTAAATTTGTTTCATAGATATGCTTCTAGTTACCATGTAGAAGCTAGAACTAGCATAAAACCCTAA 654 0.4419 MAYLNQPLIIVTFLSLFLCLAAVEPSLDLHQPPNQNQTMAYIKSSCQGTRYPDLCIRCLARFSNSTIDGPQHLVHLALSVSLFRALKTRGYLFKVAKELEEFKSDRVYLTVQDCVTQIDDSVDQLCQAIKELRMLNKRTTIDDNFLWHISNVETWVSTALTDASYCVQSLPGTKMSKRTATIKVKAQNVAEVTSNALNLFHRYASSYHVEARTSIKP 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00123 217 Pfam Plant invertase/pectin methylesterase inhibitor 41 199 IPR006501 GO:0004857
Spst1g00123 217 SMART PMEI_2 37 199 IPR006501 GO:0004857
Spst1g00123 217 NCBIfam pectinesterase inhibitor domain 10 202 IPR006501 GO:0004857
Spst1g00123 217 PANTHER PECTINESTERASE INHIBITOR-LIKE 13 199 - -
Spst1g00123 217 FunFam Pectinesterase inhibitor 3 37 204 - -
Spst1g00123 217 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 41 203 IPR035513 -
Spst1g00123 217 CDD PMEI-like_3 44 205 - -
Spst1g00123 217 Gene3D Invertase/pectin methylesterase inhibitor family protein 37 203 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00123 Spst-Chr1 1881343 1881996 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00123 32 206 Carbohydrate Esterase AT1G53840 25.275 1.78e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00123 - - pvu:PHAVU_002G180000g 299.286