Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00122 ATGCATATGCTCCGGCTGAAACTGCTACTCTTCCTCATATGGGCTTCTTCTCCACCTTTTTCCAGCTCCATGACCCAGCTAGACACTCTCTTGGCTATCAGAGACTCCCTAGACCCAGAGAACCGCGTGTTGCTTTCATGGACCCCCCATTCGGACCCGTGTAGTGATGCCTCTTTTGAGGGTGTGGCTTGCAATGAGCAAGGCCTCGTTACCAATATTTCACTGCAAGGAAAGGGTCTTTATGGAAGGTTACCTGATGCTTTAGCTGGTCTCAAGAACTTGACGGGTCTCTACCTTCACTTCAATGCCCTCAACGGGATACTTCCAAACGAAATTGCCACTTTGACTGAGCTAAGTGATTTGTATCTCAATGTCAATAACCTCTCTGGTGATATCCCTCGCGAGATTGGCAATATGTCAAACCTTCAAGTTTTGCAGCTTTGTTATAACAAATTTAGTGGGAGTATACCTACTGAACTGGGAAGATTGAGTAAGCTCAGTGTTGTTGCACTGCAATATAATCAATTAAATAGCGCTATTCCTGCGAGTTTGGGTGAAGTGGGGACATTGGCACGATTGGATCTGAGCTTCAACAGCCTTTTTGGTCCAATTCCGGTGACATTGGCTAATTCACCTAAACTGGAGACTCTGGATATTCGAAACAATTCTCTCTCTGGCCGTGTCCCTCCAGCTCTAAAGCGACTCAAAGATGGGTTTCAGTACATGAACAATCCTGATTTATGTGGGACTGGATTTGCTCATTTAGATTCTTGCAAAGTAGTAAGCAGTTCAGACCCTGTTAGACCCGAACCATATGAACCTGCTGATATTTCCACCAAAGATCTTCCTGCATCAATTGAACCAAAACCTGAAAGCTGTCGCAGTGTTCATTGTAAAAGGACATCGAAATCTTCAAAAATTGGTTTGGTTTTTTCCGTCATTGGAGTCATTGTTGCTTCAACTGTTGCTGGACTGTTTTTGATCTTATGGCGCCGTCGTCAGAATCAGAAAATTGGAAGTTCTGATAGCCGACATAGTACGCAGGTGTGCCACAAAAGTGCTTCTCCTCTTGTAAGTTTGGAGTATTCTGACGGTTGGGACCCATTGGCCAAAGGTCGAAGTGGGTATTCCCAGGAAGTTCTGGAGAGCTTTATGTTTAATCTTGAAGAAGTAGAACGCGCAACTCAAAGCTTCTCAGAGGTAAATTTATTGGGAAAGAATGGTTTTTCAGCTGTGTACCGGGGGGTTTTGATGGATGGTTCTGTTGTGGCTATAAAGTGCATTGCCAAGACAAGTTGCAAATCTGATGAAGATGAGTTTTTGAAAGGTTTGAAGATATTGACCTCGTTGAGGCATGAAAATGTAGTTCGGTTGAGAGGGTTTTGCTGTTCAAAAGGCCGCGGGGAATGTTTTCTGATCTATGACTCTCTCTCAAATGGGAGTTTGTTGCAGTATCTTGATGTTCAGAAAAACAGTGGTAGGGTACTTGATTGGTCCACCAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATCTGTTATCTACATAGGAAGAAAGGAAGCAAAGATGGTATAGTTCACCAGAGTATATCAGCTGAAAATATACTTCTGGATGCTCGGTATAACGCATTACTGGCAGATTCAGGATTGCACAAGCTCCTTGAAGATGATGTTGTTTTTTCTGCCCTCAAAGCTAGTGCAGCCATGGGATATCTGCCTCCAGAGTACACGAAAACTGGTCGTTTGACCGAAAAGAGTGATGTGTATGCCTTTGGAGTGATTGTATTCCAGCTTCTCACTGGAAAACGTGGTATGACTCAGTTAAATTGCCAATGGGTAGAAAGTGCTAGTTTGAAAGATATAGTTGATGAAAATCTTGAAGGGATGTTCTCAGAATCAGAGGCCACCAAGCTGAGAAGAGTTGCTTTGCTTTGCACCCTGGAATCCCCACATCTTCGACCATCTATGGACAACCTTGTGCTAGAACTGGGTGATAAACAGTAG 2004 0.4371 MHMLRLKLLLFLIWASSPPFSSSMTQLDTLLAIRDSLDPENRVLLSWTPHSDPCSDASFEGVACNEQGLVTNISLQGKGLYGRLPDALAGLKNLTGLYLHFNALNGILPNEIATLTELSDLYLNVNNLSGDIPREIGNMSNLQVLQLCYNKFSGSIPTELGRLSKLSVVALQYNQLNSAIPASLGEVGTLARLDLSFNSLFGPIPVTLANSPKLETLDIRNNSLSGRVPPALKRLKDGFQYMNNPDLCGTGFAHLDSCKVVSSSDPVRPEPYEPADISTKDLPASIEPKPESCRSVHCKRTSKSSKIGLVFSVIGVIVASTVAGLFLILWRRRQNQKIGSSDSRHSTQVCHKSASPLVSLEYSDGWDPLAKGRSGYSQEVLESFMFNLEEVERATQSFSEVNLLGKNGFSAVYRGVLMDGSVVAIKCIAKTSCKSDEDEFLKGLKILTSLRHENVVRLRGFCCSKGRGECFLIYDSLSNGSLLQYLDVQKNSGRVLDWSTRVFIIRGIAKGICYLHRKKGSKDGIVHQSISAENILLDARYNALLADSGLHKLLEDDVVFSALKASAAMGYLPPEYTKTGRLTEKSDVYAFGVIVFQLLTGKRGMTQLNCQWVESASLKDIVDENLEGMFSESEATKLRRVALLCTLESPHLRPSMDNLVLELGDKQ 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00122 667 SUPERFAMILY Protein kinase-like (PK-like) 377 661 IPR011009 -
Spst1g00122 667 MobiDBLite consensus disorder prediction 266 288 - -
Spst1g00122 667 FunFam Leucine-rich repeat receptor-like kinase 25 135 - -
Spst1g00122 667 Gene3D Phosphorylase Kinase; domain 1 371 475 - -
Spst1g00122 667 Gene3D Transferase(Phosphotransferase) domain 1 477 667 - -
Spst1g00122 667 ProSiteProfiles Protein kinase domain profile. 398 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00122 667 FunFam Protein NSP-INTERACTING KINASE 2 370 476 - -
Spst1g00122 667 SUPERFAMILY L domain-like 24 235 - -
Spst1g00122 667 Pfam Protein tyrosine and serine/threonine kinase 402 662 IPR001245 GO:0004672|GO:0006468
Spst1g00122 667 Pfam Leucine rich repeat N-terminal domain 26 65 IPR013210 -
Spst1g00122 667 FunFam Protein NSP-INTERACTING KINASE 2 137 259 - -
Spst1g00122 667 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 72 661 - -
Spst1g00122 667 CDD STKc_IRAK 404 663 - -
Spst1g00122 667 Pfam Leucine Rich Repeat 213 235 IPR001611 GO:0005515
Spst1g00122 667 Gene3D Ribonuclease Inhibitor 141 258 IPR032675 -
Spst1g00122 667 Gene3D Ribonuclease Inhibitor 25 138 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00122 Spst-Chr1 1864944 1867727 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00122 8 511 Miscellaneous Gene Families AT4G22730 50.478 2.21e-170 496
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Spst1g00122 PK_Tyr_Ser-Thr 2.4e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00122 - - vun:114183221 1098.96