Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00118 ATGGAGTCACCACCCAGTAATCACCACGCCGTCGATGGCGATGCCAACGACGTTGGACCCTTTTCCCACCGCAACGACGAAGACGACAAACCCCAACCTCTCACCGGCGACGGCGCCAGTCCCGGAAAGATTTTTATTGGCGGTTTAGCGAGAGAAACCACGATTGCACAATTTATCAAACACTTTGGTAAATACGGTGAGATAACGGATTCCGTTATCATGAAGGACCGGAAGACCGGCCAGCCTCGCGGCTTCGGCTTCATAACTTACGCGGATCCCTCTGTGGTTGACACAGTTATTGAGGACACTCACATTATCAACGGCAAACAGGTCGAGATTAAGCGGACAATACCGAGGGGGGCCGTTGGCTCGAACTCGAAGGACTTCCGAACCAAGAAGATTTTTGTTGGTGGAATTCCTTCTACTGTGACCGAAGATGAATTTAGGGACTTCTTTACACGCTATGGAGAAGTGAAAGATAACCAAATAATGCGGGACCACTCTACTAATCGTTCGCGTGGCTTTGGGTTTATCACCTATGACTCTGAAGAAGCTGTTGATGATCTCTTAGCTGTGGGGAACAAAATTGAGTTTGCTGGAGCTCAGGTAGAAATAAAAAAGGCAGAACCAAAGAAGCCAAATCCACCAGCTCCATCTTCCAAGCGCTATAATGACTCCCGGTCTTCATATGGTGGTGGATATGGAGATGCTTATGATGGATTTGGTGGTAATTTTGGTATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGGTGGGTATGGAAGATATGCCGGTGCCATGGGGCCTTATAGAGCTGATCCTTCACTTGGATATGCTGGTCGATATGGTGGAGGCTTTGGCAGAGGCTATGATCTTGGTGGGTATGGTGGAGCTAGTGAGGGTTATGGGGCATATGGTGGTGGTGGTTCCTCTGGTAATGCTTATGGAAGCAGCTATGATGCCAGCCTAGGGGCTGGATATGGGGGGGCTGGTGGAGGCTCCTTTTATGGCACTAGAGGGGGATATGGTGGTGCAGGAACTGGTCGATATCATCCGTATGGAAGATAG 1107 0.4959 MESPPSNHHAVDGDANDVGPFSHRNDEDDKPQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDTVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDNQIMRDHSTNRSRGFGFITYDSEEAVDDLLAVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDAYDGFGGNFGMGGYRSGGAYGGRGSAYGGFGSEFGGYGRYAGAMGPYRADPSLGYAGRYGGGFGRGYDLGGYGGASEGYGAYGGGGSSGNAYGSSYDASLGAGYGGAGGGSFYGTRGGYGGAGTGRYHPYGR 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00118 368 MobiDBLite consensus disorder prediction 206 227 - -
Spst1g00118 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 132 210 IPR000504 GO:0003723
Spst1g00118 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 41 123 - -
Spst1g00118 368 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 27 368 - -
Spst1g00118 368 SUPERFAMILY RNA-binding domain, RBD 126 240 IPR035979 GO:0003676
Spst1g00118 368 Gene3D - 124 240 IPR012677 -
Spst1g00118 368 MobiDBLite consensus disorder prediction 1 41 - -
Spst1g00118 368 SUPERFAMILY RNA-binding domain, RBD 7 121 IPR035979 GO:0003676
Spst1g00118 368 MobiDBLite consensus disorder prediction 19 33 - -
Spst1g00118 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 111 IPR000504 GO:0003723
Spst1g00118 368 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 134 202 IPR000504 GO:0003723
Spst1g00118 368 Gene3D - 42 121 IPR012677 -
Spst1g00118 368 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Spst1g00118 368 SMART rrm1_1 133 206 IPR000504 GO:0003723
Spst1g00118 368 SMART rrm1_1 43 114 IPR000504 GO:0003723
Spst1g00118 368 FunFam Heterogeneous nuclear ribonucleoprotein 1 124 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00118 Spst-Chr1 1799043 1801981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00118 18 192 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 5.74e-15 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00118 K12741 - gmx:100813165 493.041