Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00113 ATGCCTGTTCTAGAACACTTGGACTTCTCCATAAAAGAAAATCAAGTCATTGCCATTGTTGGTCTGAGTGGTAGTGGAAAGAGCACATTACTCAACCTTTTACTTCGTCTATATGAGCCTAGTAGTGGTCAGATATATATTGATGGGTTCCCTCTTAAAGAGTTGGATATCCGGTGGCTGCGGCAGCACATTGGATATGTTGCACAGGAATCCCATCTCTTTCACATGGACATCAAGTCAAACATAAAGTATGGTTGCCCCAGGGACATACAACAAGAAGATATTGAACGGGCAGCGAAAAAGGCCTATGCCCATGATTTCATTTCTTCTCTTCCTAATGGATATGAAACAATTGTTGATAACAATGCACTTAGTGGTGGACAGAAGCAGCGAATTGCCATTGCCAGAGCCATTCTTAGGGACCCTGTTATAATGATACTTGATGAAGCAACCAGTGCTCTAGATGCTGAGAGTGAGCATTATATCAAAGAGGTGCTGTATGCCTTAAAAGATGAATCTAAAACAAGAACCATCATTATTATAGCTCATAGGCTTTCTACTATCAAAGCTGCTGATAAGATATTTGTTATGGACGATGGTCGCATCATTGAGGTGGGAGATCACGAAGAGCTTATGATCAAGGATGGGCTCTATGCAAAATTAAATAAAATCCAAGCAGATATTTTGACTTGA 693 0.404 MPVLEHLDFSIKENQVIAIVGLSGSGKSTLLNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQHIGYVAQESHLFHMDIKSNIKYGCPRDIQQEDIERAAKKAYAHDFISSLPNGYETIVDNNALSGGQKQRIAIARAILRDPVIMILDEATSALDAESEHYIKEVLYALKDESKTRTIIIIAHRLSTIKAADKIFVMDDGRIIEVGDHEELMIKDGLYAKLNKIQADILT 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00113 230 FunFam Multidrug ABC transporter ATP-binding protein 1 228 - -
Spst1g00113 230 PANTHER ABC TRANSPORTER B FAMILY 2 222 IPR039421 -
Spst1g00113 230 SMART AAA_5 13 201 IPR003593 GO:0016887
Spst1g00113 230 ProSitePatterns ABC transporters family signature. 124 138 IPR017871 GO:0005524|GO:0016887
Spst1g00113 230 Gene3D - 2 225 IPR027417 -
Spst1g00113 230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 2 225 IPR027417 -
Spst1g00113 230 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1 224 IPR003439 GO:0005524
Spst1g00113 230 Pfam ABC transporter 4 152 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00113 Spst-Chr1 1751375 1754298 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00113 3 225 Calmodulin-binding Proteins AT2G36910 52.423 1.19e-65 218
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00113 - - vum:124820309 419.853