Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00112 ATGTCACCTAACCCAAATTTCCTTCGTTTTCCTCACTCCAACATTGACTTATCCCACGTTCCCAAATGGAACACATTCGTCCCCTACATCTCTACCAAACCCCAAACCCACTCTTCCCTCACCCAACCGGGTCGCTTCCAACCATTCCGCGTCATCGCCCCTAAAGCTCGGTGCCAGCTCCGTCCCCTGTTCGCGAAACGGGTGGGGGTTTTGGCATCAATTCTACCCGGAGGACGCTGGTGGGCCTTGCCGGAGCTCCGAGAAGACGGCTCGGAGCCAACGGCAGCGGTAATCGCTCTGAGGCGAATGTGGGAGTTGGTCGCCGATGAGCGACGGGTCGCGTTTGTGGCGGTTGGGTCCCTTGTAATTGCTGCTGTGATTCTTACTGTTATATGTAGACTCGTTCTCAGGGGTGTTAACGAGTTGAAAACTTTGATGGATCAACTTTCAGAAATCTCCATGCCAAGTATATTGGCAGCATCAATATTTTCAGCACAGAGTGGTGAGACTGTGGCATTCTCTAGAAATGCACTGTTTTTGCTTCTTCTTTGTTTAACTTCAGGGACATGCAGTATTAAGACTGAGTGGGCCATAATTTTGTTCTCCCATTTGAATTTCAGTGGCCTACGGAGCGGCTGCTTTGGAATTTTGAATGTAACCTTGGTGAAGCGTCTAAGAGAAAATTTATATACAGCCATTCTTTTCCAGGATGTCTCCTATTTTGATAAAGAAAGAGTTGGTGACTTGACAAGCAGGCTTGCAGCAGATTGTCAACGACTATCCCATGTAGTAGGAAATGATCTTCAGCTGATATTACGCAACACTTGTCAGGGAGCTGGAGCAATACTTAATTTGATGGCTTTATCTTGGCCTTTAGCTTTATCTGCCTTGGTGATATGTTCTATTTTATCTGCAATTTTCCTGGTTTATGGCCAGTATCAAAGAAAGGCAGCAAAGCTAATCCAAGATTTCACAGCTTGTGCAAATGACGTTGCTCAGGAGACACTATATTCAATAAGAACTGTCCGTGCTTATGGAACAGAAAAAAGAGAATTTGAAAGGTACAGGCAATGGCTGCAGACCTTAGCATTTATAAATGTTCGAGAGAATGTGGCTTCTGGGTTTTGGAACCTGATATTTAACACCTTATACCGTTCTACTCAGATATTTGCAGTGTTGTTGGTAGGTATGTCCGTTCTCAGATGTCGTGTAACTGTGGAACAACTTACCAAGTATGTACTATACTGTGAGTGGTTGATTTATGCAACTTGGAGGGTGACAAACAGCTTAACATCATTACTGCAGTCCATTGGAGCATCTGAACAAATATTCCAATTGATGAATCTTTTGCCCAGTGATCAATTCATAGCCAAAGGCAAGGGTTTGTTCGGATCAGCTCATCAGACTAAGCATTTTGATACCCCTATTCTCACCTACTGCAGGAGTGAAGTTACCGAGGTTGGTAGGGCATATTCAGTTTGCAAATGTATCATTTCATTATCCTGCAAGGAGTATGCAAAAGGATTGAAGATATGGATTAGTGATGGAGTCAACCTCCATTACCTCAAAACGGCTCCATGTCACCCATCAAAGATTCTTATTACATGGCATGCTCTCAATGATGAAACACTTTCAGTCAAATTTGATATCTACGGACCGTAA 1662 0.4398 MSPNPNFLRFPHSNIDLSHVPKWNTFVPYISTKPQTHSSLTQPGRFQPFRVIAPKARCQLRPLFAKRVGVLASILPGGRWWALPELREDGSEPTAAVIALRRMWELVADERRVAFVAVGSLVIAAVILTVICRLVLRGVNELKTLMDQLSEISMPSILAASIFSAQSGETVAFSRNALFLLLLCLTSGTCSIKTEWAIILFSHLNFSGLRSGCFGILNVTLVKRLRENLYTAILFQDVSYFDKERVGDLTSRLAADCQRLSHVVGNDLQLILRNTCQGAGAILNLMALSWPLALSALVICSILSAIFLVYGQYQRKAAKLIQDFTACANDVAQETLYSIRTVRAYGTEKREFERYRQWLQTLAFINVRENVASGFWNLIFNTLYRSTQIFAVLLVGMSVLRCRVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFIAKGKGLFGSAHQTKHFDTPILTYCRSEVTEVGRAYSVCKCIISLSCKEYAKGLKIWISDGVNLHYLKTAPCHPSKILITWHALNDETLSVKFDIYGP 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00112 553 Pfam ABC transporter transmembrane region 198 417 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g00112 553 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 206 435 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Spst1g00112 553 Gene3D ABC transporter type 1, transmembrane domain 95 453 IPR036640 GO:0005524|GO:0016020
Spst1g00112 553 PANTHER ABC TRANSPORTER B FAMILY 139 459 IPR039421 -
Spst1g00112 553 SUPERFAMILY ABC transporter transmembrane region 101 453 IPR036640 GO:0005524|GO:0016020
Spst1g00112 553 CDD ABC_6TM_TAP 148 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00112 Spst-Chr1 1740254 1750123 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00112 204 350 Calmodulin-binding Proteins AT2G36910 24.832 1.02e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00112 - - gmx:100797529 667.922