Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00111 ATGAAAGCTAGGATCATTAAGAGGAGCAGACTGTGTTTGGTTTTCAGTTGTACTTCATGGAGTGGTAGAATGCTCCAACCGCTTCCTGGGTTGAGTATGATTCACCACCTACTTGCGATTGCAGTTAAAATGCTATCCATGCCATTTGATAAAGTTATTCACCCCATCCATGACCAGACCTTCTATCTGAATATGGATCACAAGAGGAATCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTACTCAAAAGGTAGGAGATGCCGTTTTCATTCCAGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTACTAAGGTTGCACTGGATTTCGTTTCTCCTGAAAATGTTGGGGAGTGCTTTCGTTTGACAGAAGAGTTTCGCACGCTTCCAATAAATCACAGATCTTCCGAGGACAAATTGGAGGAAGAGCTAATCTTGGTGAAGAAGATGACAATATATGCCATGAAAGATGCAATCAAAATATTGATGAACGCAAGGTTAGTAATTGCAAACTTAAGGCCCTTTGACAATGAACTCGATCCTCTTGAATCATCTATTGGTGTTAAGGTTCGGGAAATCACACCCGCTGGTAGCAAAGTGCCCAAGATTGTGCTCGAGTTTTCTAATCTGCCGGAAGAGGAATCAGAGCGACTAAAGAAGCTTCTGAATTCTATTGACAAAGTTGAGGAACAGGTGCTTCAACAGTTGCAAATACTGGAGAACACCGCCAGTGCCAAGGAGGCAGAAAGGGAAAATCGAGTACGTACTTTGATGTCCATGAGAACAAGTATGGATGAGAAGCTTGATAGAGAGAGTTATGGATTTGAATTAGCCTTGCAGAGGGGATTTTCAGAACTCATGCATACATTAGTCAAGAGGAGTAGGCTGATTCTCCAACTCAAGGATCTATGGCACATTGGCACCGCTCCTTTACAAATGGCTCCCCAACCTTCAAAGGACAATTGTGACCTTGTACCTAATCATACAGGATTTGCTGTGAAATATGTAACCCTGCGACCCATTCCTCAGTGGCTTAATTGCAAACATGGATGGTGGCTGCAAAAAGTGGTTCCTGGGATATCAAGCAGTGGGAAGATATTTAGAGATGCAGAGGTTCAGCTGTTGGAAATCCCTATATATGCCGCTGAAGTTTTGGGGTTATCTAGCCATGGAAATCCCTCTCTCTAA 1197 0.4311 MKARIIKRSRLCLVFSCTSWSGRMLQPLPGLSMIHHLLAIAVKMLSMPFDKVIHPIHDQTFYLNMDHKRNLKEEYGIEPWTFTQKVGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECFRLTEEFRTLPINHRSSEDKLEEELILVKKMTIYAMKDAIKILMNARLVIANLRPFDNELDPLESSIGVKVREITPAGSKVPKIVLEFSNLPEEESERLKKLLNSIDKVEEQVLQQLQILENTASAKEAERENRVRTLMSMRTSMDEKLDRESYGFELALQRGFSELMHTLVKRSRLILQLKDLWHIGTAPLQMAPQPSKDNCDLVPNHTGFAVKYVTLRPIPQWLNCKHGWWLQKVVPGISSSGKIFRDAEVQLLEIPIYAAEVLGLSSHGNPSL 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00111 398 Pfam JmjC domain, hydroxylase 51 113 IPR003347 -
Spst1g00111 398 SMART cupin_9 8 130 IPR003347 -
Spst1g00111 398 SUPERFAMILY Clavaminate synthase-like 54 147 - -
Spst1g00111 398 Coils Coil 232 252 - -
Spst1g00111 398 Gene3D Cupin 32 139 - -
Spst1g00111 398 ProSiteProfiles JmjC domain profile. 1 130 IPR003347 -
Spst1g00111 398 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 47 167 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00111 Spst-Chr1 1731465 1738816 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst1g00111 JmjC 9.6e-13 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00111 K15601 - gmx:100780803 207.223