Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00103 ATGGGAGTCCACGGTCTCTGGGAGCTACTCTCCCCCGTCGGTCGCCGCGTCTCCGTCGAAACCCTCGCCGGAAAAACTCTCGCCGTTGATGCGAGCATATGGATGGTGCAGTTTATGAAAGCGATGCGCGACGAGAAGGGCGAAATGGTTCGGAACGCCCATTTGCTGGGCTTCTTCCGTCGCATTTGCAAGCTTCTGTTCCTCCGCACCAAGCCGGTCTTTGTCTTCGACGGCGGAACCCCTGCCCTCAAGCGTCGCACCGTCGTCGCCCGCCGCCGCCAGCGCGAAAACGCCCAAGCTAAAGTCCGCAAAACTGCGGAGAAATTGTTGCTTAATCATTTAAAGACGCTAAGGTTGAAGGAAGTGGCTGATGATATTAAGAGCCAGAGGATGCAGAAGAATGGTAATACTAAGGGTCAGGATAAATCTAATCAGAAGGACTTTGTTGGTAGTGATTCAGGAAGACGTCATGTGAAAGAGCTGGATGAAATGTCTGCAACTAAGGAGGACATAAATTCTTCACAAGCAACAGTATCGACAGGTTACAACCAGGAAGATCTTGACGAAATGCTAGCAGCATCCCTAGCTGCAGAGGAAAATGGAAAGCATGTCAGAAAAGGAGCGCCGACTATTGTAATTAATCCTCCAGAGGAGGAACCTGATGCAGAAGAACAGATTCTACTGCCAGCAGTAAATGCAGAACTTGATATAGCGGTACTAGCTGCTTTGCCACAGTCTATGCAACTTGATATTCTAGCACAGCTTAAGGGAAAGAAAACAGAAGGACTTGTAAAGGAAGTTGACAACCATGAACAACATGAAGTCAATTATCGAGGCAAGGGTAAGGGGATTCTGCTCAGTGAAGCTGACATGGTTGGTTGTAGCTCCCAACATGACGATGTTGCATCAATGAGAGACAATCAAGCCTCAATTGACGAAATGTTAGCTGCATCTATTGCTCTGGAGGAAAATGATGATTTAGTAAATAAAGCATCAACTCCTGTTGGGGCTTCCATTAATGAGGAAGAGGAAGTTGACTATGATGAAGATGAAGAGATGATACTACCTGCTATGCATGGTCAAGTTGATCCAGCTGTTCTAGCCTCATTGCCTCCATCAATGCAGCTGGACCTTCTTGTTCAGATGAGAGAGCGTTTAATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCTGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAGATGAAGTGCAGAAAGCTGCAGCTGGAGGTGGAGTAGGTGGTGTACAAACTTCACGGATTGCATCTGAAGCCAACAGAGAATATATTTTCTCGTCATCTTTTACTGGTGATAAACATGAACTTACCTCCACCAGCTTAGAGAAAAATAAAAATACACAACAGAAGGCACAGGGAGCACATCCTTCCCAGAATCTTGCAAATAGCATGGTGGCTGCAAATGATTTTAATAAATCAAGTGAATTGGTTTGCAATGAACCTAGTGAGATTGCTGATGAAAATATTCAGACATATCTTGATGAGAGGGGTCGATTTCGTGTGAGTAGATTGAGAGCTATGGGGATGCGTATGACCCGTGATATACAAAGAAATCTGGATTTGATGAAGGAGTTTGAGCAGGAAAGGGCACATGTGAACAAGGCTTCAAATCTGGGAACAGTGAAAAATGTAGAGAATACGGGTTCATCAAAAAGTTCTGGGATCCAGCTTGTTAGTAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGGATGTGCAAAATGAACAAAAAATGCTTCGCCAAAAAGCTTCTATAGAGATATCTTTTGAATATGGTTGCAAAAACGATTTTTCAAATGGTGAGGATGATATATTTTCTAGTTTAGTAGGAGGAAATCCAGTGGGGATCTTTGCTGCTGATGATACTGCAGCAGCAGAGCAACCTTCTCATTCTGATTGGGAAGAAGGAATTGTTGAAGGTAAGACTACTGCTTTTCCTGAACATGATAAGGTAGAGTTGAGATCTTCTGTTGCAGACAAGGATAATAATAGTAGTGAAAGTGAAGTAGAATGGGAAGAAGGAGATTGTGATGCTGCTAACAACAGCTTACTGTCAGGAAAATTTGCATCTAGAGGATGTTTGGAAGAGGAGTCCGATTTGCAGGAGGCAATAAAGAGAAGTCTTGAGATTACAGAGGATGGAAAACGCAAATGTATGTCATTGGTAGATGAGCATTCAAATACTTATGAGAACAAACTGGATCATGATTCAGAACATGATGATGATCTGTTTTGTTCTGACCCAATGGATTTAAATGATAACACTGGGTTCCTAAATAATAAAAATAATATGGAGGGATTCACTTTGTGTAGGGAAGACAGTACTGATAAAAACGAATTACATGAAATAGAAGATGGAGATAAAAAGCATGATTTTGTTTCTGGAAATAATGCACAAACTTTCCATTTTTATGGAAGTCCGTCAAAGCCATCTATGATATTTAATTCGAATAAAACTGAGATATTGATTGACACAGCTTGCACATGGAATGGCCACCCTTGTTCTGAAGATTCAATTTCAGATACAAATGTAATGACGAAGGCCCAGGTCCCTGTGGTTGCAGAGCAGTTATTGGATAAACATGATAATGATAAAGTGTCTTTGAATTGTGGGAATATATCCAAGGTCGATCCAGTTGATGGAACTGAAGAGGAGAAAAAGAACTATATTCATGAATCTGAACCATTGAGAAATTGTACTGACACTACCAAACCCACTATTCTTTTGGTGGAATCATCCTTGAAAGGAACACCAAAAGACCTTCTTATTGAGCCAAAATTGGCTTCAGAGGACAATAATGGAATTTCCTTTGATGAAAGGAAGAGTAGCTATGACAAGGATGCGGTTAACACCCCACGGGATTTTCCTGCTCTTGCAACTGAGGTTAGCTTGGAGGAAGAAATTCAAATTCTTGGTCAAGAATATATTAAACTAGAGAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGTGTTGAACTGA 3099 0.4179 MGVHGLWELLSPVGRRVSVETLAGKTLAVDASIWMVQFMKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVVARRRQRENAQAKVRKTAEKLLLNHLKTLRLKEVADDIKSQRMQKNGNTKGQDKSNQKDFVGSDSGRRHVKELDEMSATKEDINSSQATVSTGYNQEDLDEMLAASLAAEENGKHVRKGAPTIVINPPEEEPDAEEQILLPAVNAELDIAVLAALPQSMQLDILAQLKGKKTEGLVKEVDNHEQHEVNYRGKGKGILLSEADMVGCSSQHDDVASMRDNQASIDEMLAASIALEENDDLVNKASTPVGASINEEEEVDYDEDEEMILPAMHGQVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDEVQKAAAGGGVGGVQTSRIASEANREYIFSSSFTGDKHELTSTSLEKNKNTQQKAQGAHPSQNLANSMVAANDFNKSSELVCNEPSEIADENIQTYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEFEQERAHVNKASNLGTVKNVENTGSSKSSGIQLVSKSQEVNVDLVGEDVQNEQKMLRQKASIEISFEYGCKNDFSNGEDDIFSSLVGGNPVGIFAADDTAAAEQPSHSDWEEGIVEGKTTAFPEHDKVELRSSVADKDNNSSESEVEWEEGDCDAANNSLLSGKFASRGCLEEESDLQEAIKRSLEITEDGKRKCMSLVDEHSNTYENKLDHDSEHDDDLFCSDPMDLNDNTGFLNNKNNMEGFTLCREDSTDKNELHEIEDGDKKHDFVSGNNAQTFHFYGSPSKPSMIFNSNKTEILIDTACTWNGHPCSEDSISDTNVMTKAQVPVVAEQLLDKHDNDKVSLNCGNISKVDPVDGTEEEKKNYIHESEPLRNCTDTTKPTILLVESSLKGTPKDLLIEPKLASEDNNGISFDERKSSYDKDAVNTPRDFPALATEVSLEEEIQILGQEYIKLENEQRKLERNAESVNSELFTECQVLN 1032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00103 1032 CDD PIN_XPG_RAD2 2 92 - -
Spst1g00103 1032 Coils Coil 989 1023 - -
Spst1g00103 1032 Gene3D - 1 151 - -
Spst1g00103 1032 MobiDBLite consensus disorder prediction 129 147 - -
Spst1g00103 1032 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Spst1g00103 1032 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Spst1g00103 1032 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Spst1g00103 1032 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 255 1031 - -
Spst1g00103 1032 MobiDBLite consensus disorder prediction 125 156 - -
Spst1g00103 1032 SUPERFAMILY PIN domain-like 2 105 IPR029060 -
Spst1g00103 1032 Pfam XPG N-terminal domain 1 97 IPR006085 GO:0004518
Spst1g00103 1032 Gene3D - 350 388 - -
Spst1g00103 1032 SMART xpgn3 1 98 IPR006085 GO:0004518
Spst1g00103 1032 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Spst1g00103 1032 Pfam Ubiquitin binding region 362 386 IPR025527 -
Spst1g00103 1032 Pfam Ubiquitin binding region 238 254 IPR025527 -
Spst1g00103 1032 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Spst1g00103 1032 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Spst1g00103 1032 MobiDBLite consensus disorder prediction 682 702 - -
Spst1g00103 1032 FunFam DNA repair protein UVH3 1 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00103 Spst-Chr1 1619281 1626001 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00103 1 100 Core DNA Replication Machinery Family AT5G26680 36.364 1.43e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00103 K10846 - gmx:100820295 1573.14