Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00102 ATGTTTGGCTTGCCATATATTATTGCTCCAATGGAGGCAGAAGCTCAATGTGCTTATTTGGAACTTGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTCCTTTTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGCAAATACGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGACTGACCAGAGAAAAATTAATACGCATGGCTCTACTTCTAGGGAGTGATTATACTGAAGGTGTAAGCGGGATTGGCATTGTTAATGCTATTGAGGTTCTGAATGCATTCCCTGAGGAAGATGGCCTCCTGAAATTCCGGAAATGGGTCGAGTCACCGGATCCCGCCATCCTTGGAAGGTTGGACACAAAAAGTGGATCAAATACCAGAAAGAAAGGGTCAAAAGTTGAGCAAAAGATAAATTCCTTAAATTCTGATGTTAAAGAGTCTTCATCAGAGCAGAACATCTCCCATGCTCAGGAGCAAAACGAGTTGCCAGATTACATTCCAGAAATAAAGAAAACTTTCTTCAAGAAGCATAGAAATGTTAGCAAGAATTGGCACATTCCTGCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTGTTCTCCACATGTTGATAAATCAACTGAGCCTTTCACGTGGGGCAAGCCAGATCATCTTGTTCTTCGAAAATTGTGCTGGGAGAAATTTGGCTGGATTGGCCAGAAAGCAGATGAATTGCTATTACCTGTGTTAAAGGAGTATAATAAACGTGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAGAGATTTGCAAAAATCCGTAGCAAAAGAATTAAGAAGGCAGTAAAAGGAATAACTGGTAAGCAGCCTTCAGATTTGATAGATGATTCTGCAGAAGAGGTGCCCAAGAGTAGGATGACTGGTAGAGAACCTGAGGATACCACATTAGAGATTTCAAGGGGAAAAGACGAAAGTCTTCAATGTAGAAGGAAAGCAAAAATACAACAGTCAAAGAAAAGGAAGAATGATACTGTTGCCAAGGAACAATTAAAGAAAAAGAAAGACAATGATAAACCTTCTTCAGTACCTGGTATATCAGAGATGGAGAATGTGCAGCCAAGTGCGCAGACAGAAGAACAGTGTGATGGTAAGGCCTTGATTCGGAGTAGAAGTGGCCGAGGAAGAGATAGAGGCATGGGAATAAAAAGAGGAAGGGATAAGGAGAGTCTCAGTTTTCAATCCTCATCTGCTAGCAGTGACATTGACGATCATGAGCCAAGAGTGCATGTGGAAAAAGTTCCAAAAGATGTGCGAAGGATAATTGAATCTGATCTCATTGGCAAAAAGAAAATCTATGCAAAAGAATACGAATGTTTCACTTACAATTTGTGTACTTTCCAGTCATTGCGCTCTCGGAAACCTGTCAACTATTCTTTCGAAGGCCCTGAAGTTGAAGATGCCAATGATTCATTTGATCAAAATAATCAGATTTGTTCAATGGAAGAAAATTTATCTCATTCTCAGGGTGCATGTGAAGATGGTGCCAAAGATTTCATCCTGGGGGAAGGATTCAGTGCAATGAACTTTCCTTTAAAGGAGAACTTGCCAACGGACTCTCTCAAGTTAGAAGGTCGGTTTCACATGGATGCAGGTGAAACTAGTTATCCTAGTACTGGCAATCATGACTCTTCTGATGACTACCTTAAAATGGGAGGTGGATTCTGTTTAGATGATGGTGAGACAGGTACCAAGCAGGATACAATTGATGTTGTCACTACTGGCACAGTGGATTATACTCCAGATTTTCCACACTGTTCTGATGGTTTGGATGAAACTGACAAAGATAGTTCAGATATATTATTTTCTGGCACTGAAAAGACTGAAAATGGGATAGACGGGGGAGGGGCCTTTTCTAAATTTGGTAGTCATGATCTTGTAAATACTAGTAGTCACGATCATTCTGACATGGGCTTGAAACCAGAGAAAGCCTCCATTGGAGCTTTCAGCGTCATGCCGCTTTTAAGGAAAAGAAGGAAAAACTGA 2061 0.4047 MFGLPYIIAPMEAEAQCAYLELEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVLNAFPEEDGLLKFRKWVESPDPAILGRLDTKSGSNTRKKGSKVEQKINSLNSDVKESSSEQNISHAQEQNELPDYIPEIKKTFFKKHRNVSKNWHIPASFPSETVISAYCSPHVDKSTEPFTWGKPDHLVLRKLCWEKFGWIGQKADELLLPVLKEYNKRETQLRLEAFYSFNERFAKIRSKRIKKAVKGITGKQPSDLIDDSAEEVPKSRMTGREPEDTTLEISRGKDESLQCRRKAKIQQSKKRKNDTVAKEQLKKKKDNDKPSSVPGISEMENVQPSAQTEEQCDGKALIRSRSGRGRDRGMGIKRGRDKESLSFQSSSASSDIDDHEPRVHVEKVPKDVRRIIESDLIGKKKIYAKEYECFTYNLCTFQSLRSRKPVNYSFEGPEVEDANDSFDQNNQICSMEENLSHSQGACEDGAKDFILGEGFSAMNFPLKENLPTDSLKLEGRFHMDAGETSYPSTGNHDSSDDYLKMGGGFCLDDGETGTKQDTIDVVTTGTVDYTPDFPHCSDGLDETDKDSSDILFSGTEKTENGIDGGGAFSKFGSHDLVNTSSHDHSDMGLKPEKASIGAFSVMPLLRKRRKN 686
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00102 686 MobiDBLite consensus disorder prediction 127 171 - -
Spst1g00102 686 MobiDBLite consensus disorder prediction 344 366 - -
Spst1g00102 686 FunFam DNA repair protein UVH3 69 126 - -
Spst1g00102 686 Pfam XPG I-region 3 84 IPR006086 GO:0004518
Spst1g00102 686 CDD H3TH_XPG 72 216 - -
Spst1g00102 686 Gene3D - 69 184 - -
Spst1g00102 686 CDD PIN_XPG_RAD2 1 70 - -
Spst1g00102 686 MobiDBLite consensus disorder prediction 299 337 - -
Spst1g00102 686 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 69 278 IPR036279 -
Spst1g00102 686 ProSitePatterns XPG protein signature 2. 3 17 IPR019974 GO:0016788
Spst1g00102 686 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 20 40 IPR006084 -
Spst1g00102 686 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 74 89 IPR006084 -
Spst1g00102 686 SMART HhH_4 71 104 IPR008918 GO:0003677|GO:0003824
Spst1g00102 686 MobiDBLite consensus disorder prediction 389 415 - -
Spst1g00102 686 MobiDBLite consensus disorder prediction 287 433 - -
Spst1g00102 686 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 545 - -
Spst1g00102 686 MobiDBLite consensus disorder prediction 369 385 - -
Spst1g00102 686 Gene3D - 1 68 - -
Spst1g00102 686 MobiDBLite consensus disorder prediction 145 169 - -
Spst1g00102 686 SUPERFAMILY PIN domain-like 2 84 IPR029060 -
Spst1g00102 686 SMART xpgineu 1 69 IPR006086 GO:0004518
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00102 Spst-Chr1 1614582 1618398 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00102 1 101 Core DNA Replication Machinery Family AT5G26680 36.538 1.40e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00102 K10846 - gmx:100820295 972.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00102 1 1614582 1618398 Spst1g00102 1 1614582 1618398 ECH