Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00100 ATGGAAAGAATTTCTACATGGATAGTATTTGCCACATCCCTTTTCCTCCTACACATGACCAGTTGTGTGGAGTATGAGGTCAAGACAACACTGATTCAATTTTTGGCTCAAGTCTCTGGTAAAGATGGCCAACAGAACTCCACTGTGGTATGGAAACAAGACTCTGATCCCTGCACGGGCCTCTGGCAAGGTGTACACTGTGATCCTCAAAACATGTCCATAAAGTGGTTGCTACTTGATAAGCTCAATTTCTCTGGAACACTTGATGTTGCTATGCTATGCAACTTGCAGCCCCTGGCTGCATCTCTCACATATCTTAGTCTTGATGGAAACAAAATTAGTGGGGGGATAGCATCTGAGGTTGGAAATTGCAAACAACTCACTCGCCTGCACCTAAGTGGAAACCAACTCGCTGGATACCTTCCTAGTTCACTTGCCATGCTGAACAATTTGAAGAGACTGGACATTTCGAATAACCAGTTTTATGGACCTTTACCAAACTTATCTAGAATCTCAGGGCTGAATATGTTCCTTGCACAGAACAATCATCTTGAAGGAACTATACCGGCTTTTGATTTCTCCAATTTTGACCAATTCAATGTCTCCTTCAACAAATTCCGTGGCCACATTCCAAAGGTGCATGGCTATTTTTCTGCTGACAGCTTTCTTGGTAATCCTGACCTATGCGGAGATCCACTACCAAAAACTTGCTCTGATCAGCATATGCCTCTTAGCGAGGCTCAGACATCAGAAGAATCAAAGGGTCCTTCTAAAGAGCAGATTCTTATGTACTCAGGCTATGCTGCATTAGGTGTTATCATTGTCATTTTCGCAGCTTTAAAGCTGTGTATAAGAAAGAAGGTAGAGAATAGAATTGAAGCATTGAATAATGGGGTAGGGACCACTGCTGGTGATGTTGAAATGCCGAGCAATGTTTCGAGCGAATACAAAACTGAGGTAAGCAGATCTGAGTTTTCAGTCCCTTCTGAAACTGGGATGGTTTCACAATCACTTGTAGTTCTTTCAACCGCAGCGCCGATTGAATTGAGATTGGAGGACTTGTTGAGGGCCCCTGCAGAACTGATTGGAAGAGGAAAGAATGGAAGTCTTTATAAGGTGAGGCTTGACAATGGGATAATGGTAGTTGTGAAAAGGATCAAGGATTGGTCTATTTCAAGCCACGATTTCAAACAAAGAATGAGAATACTGAGTCAAGCAAAACACCCTCATGTACTGGCACCACTTGCTTTCTACTGTTCTAAACAAGAGAAGCTTTTGGTGTATGAATATCAGCAGAATGGCAGTTTATTCAAGCTTCTGCATGGTACTCCAAAAACCATTGACTGGACCAGCAGACTTGGGATTGCAGCTACAACTGCTGAGGCATTAGCTTTCCTGCACCAAGAGCTAGGCCATCATGGTATCATTCATGGTAATTTGAAATCCTCCAACATTTTGCTAAACAAGAATATGGAGCCATGCATAAGTGAATATGGTGTGATGGACATGGATGATCAAAGAGGTTCACCTTTTGGCAGTCCTAATGATGCTGGTTCATTAGATATCTTAAAGGGAGATGTTTATGGGTTTGGTGTGATTCTTCTTGAACTGCTTACTGGTAAGTTAGTGAAGGGAGATGGTGTTGACTTGACTGATTGGGTTCAGTCAGTTGTGAGGGAAGAATGGACAGGTGAAGTCTTTGACAAGTCTCTAATATCAGAGTATGCAAGCGAAGAGAGGATGGTGAATTTGCTTCAGGTGGCTATAAGATGTGTGAATCGTTCACCACAGTCTAGGCCAACCATGAACCAAGTTGCTCTCATGATTAACACTATCAAAGAGGAGGAAGAAAAATCCTTGATCTATGAAGTATGA 1875 0.4235 MERISTWIVFATSLFLLHMTSCVEYEVKTTLIQFLAQVSGKDGQQNSTVVWKQDSDPCTGLWQGVHCDPQNMSIKWLLLDKLNFSGTLDVAMLCNLQPLAASLTYLSLDGNKISGGIASEVGNCKQLTRLHLSGNQLAGYLPSSLAMLNNLKRLDISNNQFYGPLPNLSRISGLNMFLAQNNHLEGTIPAFDFSNFDQFNVSFNKFRGHIPKVHGYFSADSFLGNPDLCGDPLPKTCSDQHMPLSEAQTSEESKGPSKEQILMYSGYAALGVIIVIFAALKLCIRKKVENRIEALNNGVGTTAGDVEMPSNVSSEYKTEVSRSEFSVPSETGMVSQSLVVLSTAAPIELRLEDLLRAPAELIGRGKNGSLYKVRLDNGIMVVVKRIKDWSISSHDFKQRMRILSQAKHPHVLAPLAFYCSKQEKLLVYEYQQNGSLFKLLHGTPKTIDWTSRLGIAATTAEALAFLHQELGHHGIIHGNLKSSNILLNKNMEPCISEYGVMDMDDQRGSPFGSPNDAGSLDILKGDVYGFGVILLELLTGKLVKGDGVDLTDWVQSVVREEWTGEVFDKSLISEYASEERMVNLLQVAIRCVNRSPQSRPTMNQVALMINTIKEEEEKSLIYEV 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00100 624 Pfam Leucine rich repeat 102 161 IPR001611 GO:0005515
Spst1g00100 624 FunFam Leucine-rich repeat receptor protein kinase EMS1 95 191 - -
Spst1g00100 624 SUPERFAMILY Protein kinase-like (PK-like) 359 608 IPR011009 -
Spst1g00100 624 ProSitePatterns Protein kinases ATP-binding region signature. 362 384 IPR017441 GO:0005524
Spst1g00100 624 Pfam Protein kinase domain 360 605 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00100 624 Gene3D Ribonuclease Inhibitor 196 240 IPR032675 -
Spst1g00100 624 PANTHER OS05G0588300 PROTEIN 7 614 - -
Spst1g00100 624 Gene3D Ribonuclease Inhibitor 26 195 IPR032675 -
Spst1g00100 624 Gene3D Transferase(Phosphotransferase) domain 1 432 623 - -
Spst1g00100 624 Gene3D Phosphorylase Kinase; domain 1 331 430 - -
Spst1g00100 624 ProSiteProfiles Protein kinase domain profile. 356 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00100 624 SUPERFAMILY L domain-like 53 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00100 Spst-Chr1 1610926 1612988 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00100 55 616 Receptor kinase-like Gene Family AT2G36570 34.733 3.02e-88 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Spst1g00100 Pkinase 1.8e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00100 - - gmx:100813796 1027.31