Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00095 ATGAATGGTAAGTGGTCCTTTGACCATACCCATTTGAAGATGGCTTGGATTCAGCATCAAACCCAACAAAAAGATGGTTACATGAGTTATCCACCACCGGTTTTGCCTCCCCCTTCACCCCCAATCTGGGGTGTATTCCACAAAGAATCAATGTCTTCACCATCATCTTCCTCACCTCCCTCACCTTCATCCTCTGGTGCTAGAATAAGTCCTGCTGTTCTTTTCATCATAGTGATTTTGGCTGTTCTGTTTTTCATCTCTGGACTGCTCCACCTGCTTGTTAGGTTTCTCATAAAGAACCCTTCTTCCTCAGCATCTGCCCAATCCAATAGGGACCAGGAAATTGCACCCTCTGATGCTCTACAAAGGCAGTTGCAACAACTTTTTCATCTTCATGACTCTGGTCTGGACCAGGCTTATATTGATGGACTTCCTGTTTTCCAATACAAAGAGTTAAAGGGGTTGAAGGAGCCATTTGATTGTGCTGTCTGTCTCTGTGAGTTTTCTGAAAAAGATAAGCTCAGGCTGCTCCCTATGTGCAGTCATGCTTTTCATATCAGTTGCATAGACACTTGGCTTTTGTCAAACTCCTCATGCCCTCTTTGTAGGGGGACCCTCCTTACTCCTGGATTTTCCCTTGAAAATCCAGTGTTTGATTTTGATGATTTGAGGGATGATGGGGGTTGCCCCTGCAATGGGGAACATGAGTTCACAACTAGGCAGAAAACTGTTGAAATTGAAGAAACTGTGGTAGAGAAGGGGGTTTTCCCCGTGAGACTTGGCAAATTTAGAAGGCTTGATGGGGAGGCAGAGGAGACTGCAGGAGGAGAGACTAGCAGCAGGTATTTGGATGCCAGAAGATGTTACTCCATGGGATCCTATCAATACGTGGTTGGCAACTCAGACCTCAGGATAACCTTGAGCAATGACAGACAAGGTCGTGATGCACAATTCTTGAGAGGAACAGAAAACTTGCAGAGACTTTCAATTGAAGGGGATATTGAAGCAAAGAAGATTACAAGTGTCTGTAAAGGTGAGAGCTATTCCATTTCCAAAATCTGGCAGTGGTCAAAGAAGGGAAAATTTTCAGTTTCTTCTGATACCCAGACGGGTATGCCTTCTTCTCTTAACACGGATTTGCCTTGGATGAGGGAAACAGGAAGAACATGA 1170 0.4462 MNGKWSFDHTHLKMAWIQHQTQQKDGYMSYPPPVLPPPSPPIWGVFHKESMSSPSSSSPPSPSSSGARISPAVLFIIVILAVLFFISGLLHLLVRFLIKNPSSSASAQSNRDQEIAPSDALQRQLQQLFHLHDSGLDQAYIDGLPVFQYKELKGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSSCPLCRGTLLTPGFSLENPVFDFDDLRDDGGCPCNGEHEFTTRQKTVEIEETVVEKGVFPVRLGKFRRLDGEAEETAGGETSSRYLDARRCYSMGSYQYVVGNSDLRITLSNDRQGRDAQFLRGTENLQRLSIEGDIEAKKITSVCKGESYSISKIWQWSKKGKFSVSSDTQTGMPSSLNTDLPWMRETGRT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00095 389 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 64 354 - -
Spst1g00095 389 Pfam Ring finger domain 160 203 IPR001841 -
Spst1g00095 389 SUPERFAMILY RING/U-box 140 209 - -
Spst1g00095 389 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Spst1g00095 389 SMART ring_2 161 202 IPR001841 -
Spst1g00095 389 MobiDBLite consensus disorder prediction 365 382 - -
Spst1g00095 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 208 IPR013083 -
Spst1g00095 389 FunFam RING-H2 finger protein ATL46 123 208 - -
Spst1g00095 389 MobiDBLite consensus disorder prediction 365 389 - -
Spst1g00095 389 CDD RING-H2_EL5-like 160 203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00095 Spst-Chr1 1550136 1551305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00095 58 361 C3H Transcription Factor Family AT2G18650 42.941 7.80e-57 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00095 - - qsa:O6P43_004596 546.584
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00095 1 1550136 1551305 Spst1g00095 1 1550136 1551305 ECH
Spst3g04594 3 97743705 97744703 Spst1g00095 1 1550136 1551305 ECH