Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00092 ATGTATAGAATAATATCCACGCCGGCGTCTACGTTCCGCCAGTTCCGGCGACTCCGATCCCGACCCAAGTTAACAACAGCGACAGAGGAGGAGCACGCTTTTCAGATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGACGTATTGGAACAGGGTGTTCCTCGTGACAAGCCTACTCGCCCTCTTCATCGACCCTCTATACTTCTTCCTCCCCACCGTGGGTGGCCCCGCCTGCTTGGAGGCCGACCCCAAACTCAGTATCATCGTCACCATCCTCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAACTCTAGAATCTTCGGCCGCGGCGACCTCGTCATGGACTCCCACGAAATCGCCATGCGCTACCTCAAGTCTGACTTCGTCATTGACCTCGCTGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCGAGCACCAACGCAAGAACTGACCATGCCAACAACACTCTTGCTCTTTTTGTACTTATTCAATATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCGGCGTATTCAGAAAACCACTGGCGTTATCGCCAAGACTCCATGGATTGGAGCCGCATACAATCTTGTTCTCTACTTGTTAGCCAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAGTTTAACTGCTGGAAAGCGCAGTGCAATATGGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGCAATAGTCTGGACCACCCTGATAGGCAATACTGGCTAAACATCACCCGTGTAATCACCAGATGCGACGCAAAGAGCAAAATCAACATCAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAATGATGTTGTCGTTTCCAAATTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATCTTAGCTCATACGGACAGAATTTGGACACCACCACATATCTTCCAGAGACATTATTTTGCATCTTCTTATGCATTTTTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTTAGACTAGAAGAATGGAGGATTCGGAAGAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGCGTTCGCCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAAGAGATACTGCAATCTTTACCTTTGGATCTTCGTCGATCAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCCTTCTTCTCCCAAATGGACGATCAACTTCTTGATGCTATTTGTGAACGCCTTGCGTCATCACTAAGCACTGAAGGGACCTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGCTGTTTATCATCAGAGGGCAATTGGAGAGCTCCACGACCAATGGAGGAAGGTCTGGATTCTTCAATTGCATCAAACTCCGGCCTGGTGACTTTTGCGGAGAGGAATTACTGACATGGGCCCTAATGCCAAACTCAACCCTCAACCTTCCTTCTTCTACTCGTACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTGAAATTTGTGGCATGTCAGTTCAAGCGCCTTCACAGTAAGAAACTTCAGCATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATTTCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAGAGAGGGTCTCTACTACCTGCCTGAGACGGATGGAAATGAACATTTTGAGGACCTTCAAATCGGAGAATCCTCAGGGAATGTGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCCTCAAAGTTTGCTGCCAATACAAGAAAAGGGACCCATAAGCTAGCAGATCCTGTGCCCAAATTGTTCAAGCCATCTGAACCTGATTTTTCTCAACCATGA 2058 0.4694 MYRIISTPASTFRQFRRLRSRPKLTTATEEEHAFQILWRHQILDPDSDIVTYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLEADPKLSIIVTILRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDSHEIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASTNARTDHANNTLALFVLIQYVPRLFLIFPLNRRIQKTTGVIAKTPWIGAAYNLVLYLLASHVTGATWYLSSIGRQFNCWKAQCNMENKSHTLSCFSSYLDCNSLDHPDRQYWLNITRVITRCDAKSKINIKYKFGMFAEAFLNDVVVSKFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIFLCIFGLVLFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQERVRRFVQYKWLATRGVNEEEILQSLPLDLRRSIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVACQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRFQKRKATRELSLREGLYYLPETDGNEHFEDLQIGESSGNVKKIQNLGATVLASKFAANTRKGTHKLADPVPKLFKPSEPDFSQP 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00092 685 CDD CAP_ED 452 583 IPR000595 -
Spst1g00092 685 FunFam Cyclic nucleotide-gated ion channel 1 450 568 - -
Spst1g00092 685 Pfam Cyclic nucleotide-binding domain 475 562 IPR000595 -
Spst1g00092 685 Gene3D Jelly Rolls 450 570 IPR014710 -
Spst1g00092 685 ProSiteProfiles cAMP/cGMP binding motif profile. 452 562 IPR000595 -
Spst1g00092 685 SUPERFAMILY Voltage-gated potassium channels 44 374 - -
Spst1g00092 685 Gene3D - 56 375 - -
Spst1g00092 685 Pfam Ion transport protein 51 379 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Spst1g00092 685 SMART cnmp_10 452 580 IPR000595 -
Spst1g00092 685 Gene3D Helix hairpin bin 376 443 - -
Spst1g00092 685 MobiDBLite consensus disorder prediction 663 685 - -
Spst1g00092 685 FunFam Cyclic nucleotide-gated ion channel 1 379 443 - -
Spst1g00092 685 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 30 682 - -
Spst1g00092 685 SUPERFAMILY cAMP-binding domain-like 382 577 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00092 Spst-Chr1 1512874 1517934 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00092 34 683 Ion Channels AT5G14870 69.701 0.0 989
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00092 K05391 - gmx:100802812 1246.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00092 1 1512874 1517934 Spst1g00092 1 1512874 1517934 ECH