LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Spst1g00092	ATGTATAGAATAATATCCACGCCGGCGTCTACGTTCCGCCAGTTCCGGCGACTCCGATCCCGACCCAAGTTAACAACAGCGACAGAGGAGGAGCACGCTTTTCAGATCCTATGGCGGCACCAGATACTGGACCCCGACAGCGACATCGTGACGTATTGGAACAGGGTGTTCCTCGTGACAAGCCTACTCGCCCTCTTCATCGACCCTCTATACTTCTTCCTCCCCACCGTGGGTGGCCCCGCCTGCTTGGAGGCCGACCCCAAACTCAGTATCATCGTCACCATCCTCCGCTCCTTCGCTGACCTCTTCTACGTCCTCCACATGCTCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAACTCTAGAATCTTCGGCCGCGGCGACCTCGTCATGGACTCCCACGAAATCGCCATGCGCTACCTCAAGTCTGACTTCGTCATTGACCTCGCTGCCACCATCCCTCTCCCCCAGATTGTGATTTGGTTGGTGATTCCAGCGAGCACCAACGCAAGAACTGACCATGCCAACAACACTCTTGCTCTTTTTGTACTTATTCAATATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCGGCGTATTCAGAAAACCACTGGCGTTATCGCCAAGACTCCATGGATTGGAGCCGCATACAATCTTGTTCTCTACTTGTTAGCCAGCCATGTTACAGGAGCGACTTGGTATCTATCGTCAATAGGGAGGCAGTTTAACTGCTGGAAAGCGCAGTGCAATATGGAGAACAAATCACATACCCTCTCTTGCTTTTCAAGTTATCTTGATTGCAATAGTCTGGACCACCCTGATAGGCAATACTGGCTAAACATCACCCGTGTAATCACCAGATGCGACGCAAAGAGCAAAATCAACATCAAATATAAATTTGGGATGTTCGCAGAGGCTTTCCTGAATGATGTTGTCGTTTCCAAATTTAAGGAAAGATACTTCTATTGTCTTTGGTGGGGTTTGAGAAATCTTAGCTCATACGGACAGAATTTGGACACCACCACATATCTTCCAGAGACATTATTTTGCATCTTCTTATGCATTTTTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGGAGACGTACTTGTCATCAATGACAGTTAGACTAGAAGAATGGAGGATTCGGAAGAGAGACACTGAGGAGTGGATGAGGCATCGCCAGTTACCACCACATTTGCAGGAACGCGTTCGCCGTTTTGTTCAATATAAATGGCTTGCAACAAGAGGAGTTAATGAAGAAGAGATACTGCAATCTTTACCTTTGGATCTTCGTCGATCAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCCTTCTTCTCCCAAATGGACGATCAACTTCTTGATGCTATTTGTGAACGCCTTGCGTCATCACTAAGCACTGAAGGGACCTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGCTGTTTATCATCAGAGGGCAATTGGAGAGCTCCACGACCAATGGAGGAAGGTCTGGATTCTTCAATTGCATCAAACTCCGGCCTGGTGACTTTTGCGGAGAGGAATTACTGACATGGGCCCTAATGCCAAACTCAACCCTCAACCTTCCTTCTTCTACTCGTACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTTCACTACAAGCAGAGGATCTGAAATTTGTGGCATGTCAGTTCAAGCGCCTTCACAGTAAGAAACTTCAGCATGCCTTTAGGTATTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCTGCTTGGAGACGATTTCAGAAAAGAAAGGCAACAAGGGAGTTATCCCTGAGAGAGGGTCTCTACTACCTGCCTGAGACGGATGGAAATGAACATTTTGAGGACCTTCAAATCGGAGAATCCTCAGGGAATGTGAAAAAGATTCAGAATCTTGGTGCAACTGTCTTGGCCTCAAAGTTTGCTGCCAATACAAGAAAAGGGACCCATAAGCTAGCAGATCCTGTGCCCAAATTGTTCAAGCCATCTGAACCTGATTTTTCTCAACCATGA	2058	0.4694	MYRIISTPASTFRQFRRLRSRPKLTTATEEEHAFQILWRHQILDPDSDIVTYWNRVFLVTSLLALFIDPLYFFLPTVGGPACLEADPKLSIIVTILRSFADLFYVLHMLMKFRTAFVAPNSRIFGRGDLVMDSHEIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASTNARTDHANNTLALFVLIQYVPRLFLIFPLNRRIQKTTGVIAKTPWIGAAYNLVLYLLASHVTGATWYLSSIGRQFNCWKAQCNMENKSHTLSCFSSYLDCNSLDHPDRQYWLNITRVITRCDAKSKINIKYKFGMFAEAFLNDVVVSKFKERYFYCLWWGLRNLSSYGQNLDTTTYLPETLFCIFLCIFGLVLFSLLIGNMETYLSSMTVRLEEWRIRKRDTEEWMRHRQLPPHLQERVRRFVQYKWLATRGVNEEEILQSLPLDLRRSIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCIKLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFSLQAEDLKFVACQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRFQKRKATRELSLREGLYYLPETDGNEHFEDLQIGESSGNVKKIQNLGATVLASKFAANTRKGTHKLADPVPKLFKPSEPDFSQP	685

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Spst1g00092	685	CDD	CAP_ED	452	583	IPR000595	-
Spst1g00092	685	FunFam	Cyclic nucleotide-gated ion channel 1	450	568	-	-
Spst1g00092	685	Pfam	Cyclic nucleotide-binding domain	475	562	IPR000595	-
Spst1g00092	685	Gene3D	Jelly Rolls	450	570	IPR014710	-
Spst1g00092	685	ProSiteProfiles	cAMP/cGMP binding motif profile.	452	562	IPR000595	-
Spst1g00092	685	SUPERFAMILY	Voltage-gated potassium channels	44	374	-	-
Spst1g00092	685	Gene3D	-	56	375	-	-
Spst1g00092	685	Pfam	Ion transport protein	51	379	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
Spst1g00092	685	SMART	cnmp_10	452	580	IPR000595	-
Spst1g00092	685	Gene3D	Helix hairpin bin	376	443	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Spst1g00092	Spst-Chr1	1512874	1517934	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Spst1g00092	34	683	Ion Channels	AT5G14870	69.701	0.0	989

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Spst1g00092	K05391		-	gmx:100802812	1246.49

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Spst1g00092	1	1512874	1517934	Spst1g00092	1	1512874	1517934	ECH

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