Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00087 ATGCTGTTATATATTGACAAAACCCACTTTCTCCTTCGCTCTGCGTCTCACTCCACTTCATTTCTTAGTTTTCCTTCATTCTTTCACGGCGGTTCATTTCCAACCATGGCTGCAATATCAATACCTTCTCACATGAAAGCTTGGACTTACTCGGAATATGGCAAATCCAGCGAAGTTCTCAAGTTTAACCACAGCGTGCCTTTACCTCCGGTCAGCGATGATCAGGTCCTCATCAAGGTCGCTGCTGCTTCCCTTAACCCCATTGATTATAAGAGGATGGAAGGTTATTTCAAGAACTCTGATTCCCCTTTACCCACTTCTCCGGGGTACGATGTTGCTGGAGTGGTGGTGAAAGTGGGAAGTGAAGTGAAGAAATTCAAGGTTGGGGATGAAGTTTACGGAGATATCAATGTGAAAGCTTTGGAATATCCAAAGGTGATTGGTTCTTTGGCTGAGTACACTGCTGCAGAAGAGAGATTATTGGCTCACAAGCCACAGAATCTGAGCTTTGCTGAGGCTGCTAGCCTTCCTTTAACACTTGAGACTGCTTATGAAGGCCTTGAACGAACTGGGTTTTCTGCTGGCAAATCTATCCTTGTGCTTGGAGGTGCTGGTGGAGTTGGAACCCATGTTATTCAGCTTGCCAAGCATGTATATGGAGCATCCAAGGTAGCCGCCACAGCTAGCACCAGGAAACTAGAATTATTGAGGAATTTGGGGGCTGACTTGCCAATTGATTATACAAAGGAGAATTTTGAAGACCTGCCTGAAAAGTTTGATGTGGTGTATGATACAGTAGGGCAAACTGAACAGGCATTCAAGGCTTTGAAAGATGGAGGGAAAGTTGTGACCATAGTACCACCTGGATTTCCTCCAGCTATCCTTTTCATCCTCAGTACTGATGGGTGTATCTTAGAGAAACTAAACCCCTATTTTGAGAGTGGTAAGTTGAAGCCAATACTCGACCCCAAGAGCCCGTTTCCATTTTCTCAGGCTGTTGAAGCATTTTCCCATCTCGAAACAAACAGAGCAACTGGAAAAATTGTTGTCTATCCCATTCCGTGA 1065 0.4469 MLLYIDKTHFLLRSASHSTSFLSFPSFFHGGSFPTMAAISIPSHMKAWTYSEYGKSSEVLKFNHSVPLPPVSDDQVLIKVAAASLNPIDYKRMEGYFKNSDSPLPTSPGYDVAGVVVKVGSEVKKFKVGDEVYGDINVKALEYPKVIGSLAEYTAAEERLLAHKPQNLSFAEAASLPLTLETAYEGLERTGFSAGKSILVLGGAGGVGTHVIQLAKHVYGASKVAATASTRKLELLRNLGADLPIDYTKENFEDLPEKFDVVYDTVGQTEQAFKALKDGGKVVTIVPPGFPPAILFILSTDGCILEKLNPYFESGKLKPILDPKSPFPFSQAVEAFSHLETNRATGKIVVYPIP 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00087 354 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 195 216 IPR002364 GO:0008270|GO:0016491
Spst1g00087 354 CDD MDR_like_2 45 350 - -
Spst1g00087 354 SMART PKS_ER_names_mod 55 350 IPR020843 GO:0016491
Spst1g00087 354 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 37 354 IPR044626 GO:0016628
Spst1g00087 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 293 IPR036291 -
Spst1g00087 354 Gene3D - 52 350 - -
Spst1g00087 354 SUPERFAMILY GroES-like 41 202 IPR011032 -
Spst1g00087 354 Gene3D - 187 301 - -
Spst1g00087 354 Pfam Alcohol dehydrogenase GroES-like domain 74 138 IPR013154 -
Spst1g00087 354 Pfam Zinc-binding dehydrogenase 239 350 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00087 Spst-Chr1 1466359 1471240 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00087 105 291 Monolignol Biosynthesis Gene Families AT4G37980 25.806 1.55e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00087 K18980 - gmx:100817947 580.867