Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00086 ATGAAGGAAACAGCAAGAATGGGCCCAACCCAAGAATCTAGAACTTACAGACATCGTTACGAATGCAGGAATGCACTACAACAAGGTAGAGGAGAAGAAGCAAGCATGGCCAAAGATAAGAAAAAGCAAAAGGGAATCCCAAAAATTGAGAGCACAGAAACTCACAGGAATAAGTGTGCAGCATGCTTCAGACAGTTCAACAAACTGGAGCACCTGGTGGAGCATATGAGGATCTCATACCATTCGGTTCATGAGCCAACCTGTAGCATTTGCAGGAAACACTGCAGGTCATTTGAGTCTCTAAGGGAACATCTTATAGGTCCGTTGCCAAAGCAGGAATGCAGAGATATATTTGCCTACAAAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAATTCCCGCAGGATCCACCAAGAAAAATGCCAGCACTCTGGAACAAATGCTGGAATAATTGGTCGCTTTTCAAACTTGGGTCTTCGTGATAATTTGACTATTGGTGGTGGAGCAAGAGGACCACAAGTAGTTGCATTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGATCTTTGTGCAAGAGTGTGCTTAATCGATGAGCATGAGAACATAATATTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGCATTAGACCAGAATACCTGAGGGATGCAATGCCAATGAGACAAGTTCAAAGGAAGATTCAAGACTTTCTTTGCAATGGTGAACCAATGTGGACAATTCGAACGAGGGGAGGAAGAGCAAGGATTCTTGTGGGTCATGGTTTGGATCATGACCTTGAATGCTTACAAATAGAATATCGATCAGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACGAGCAAGCTCAGCAACTCACTCAAGTATGACATTCAAGTTGGAATTCAGGATCCTTATGATGACTGTGTTGCAACCCTGAGGCTCTACATGAGAATGAAATCCCAAGTACATAGAACACAGGATTACCCTTTGGCTTCTGACCCCCAGAACAGGAACAATTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTGGAAACATCAAGGTCTGACTACTACTGCTGGTGCTTGGATTCCTAG 1167 0.4344 MKETARMGPTQESRTYRHRYECRNALQQGRGEEASMAKDKKKQKGIPKIESTETHRNKCAACFRQFNKLEHLVEHMRISYHSVHEPTCSICRKHCRSFESLREHLIGPLPKQECRDIFAYKGCKFCLKVFDSPNSRRIHQEKCQHSGTNAGIIGRFSNLGLRDNLTIGGGARGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRKIQDFLCNGEPMWTIRTRGGRARILVGHGLDHDLECLQIEYRSEKIRDTAKYPPLMKTSKLSNSLKYDIQVGIQDPYDDCVATLRLYMRMKSQVHRTQDYPLASDPQNRNNFASWRQSELERMTPEQMLETSRSDYYCWCLDS 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00086 388 Gene3D - 173 350 IPR036397 GO:0003676
Spst1g00086 388 Pfam Exonuclease 195 296 IPR013520 -
Spst1g00086 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 57 86 IPR013087 -
Spst1g00086 388 SMART c2h2final6 86 106 IPR013087 -
Spst1g00086 388 SMART c2h2final6 57 81 IPR013087 -
Spst1g00086 388 SMART c2h2final6 121 145 IPR013087 -
Spst1g00086 388 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 59 386 IPR047021 GO:0004527
Spst1g00086 388 Gene3D Classic Zinc Finger 29 107 - -
Spst1g00086 388 ProSitePatterns Zinc finger C2H2 type domain signature. 59 81 IPR013087 -
Spst1g00086 388 MobiDBLite consensus disorder prediction 27 50 - -
Spst1g00086 388 ProSitePatterns Zinc finger C2H2 type domain signature. 123 145 IPR013087 -
Spst1g00086 388 SMART exoiiiendus 175 341 IPR013520 -
Spst1g00086 388 SUPERFAMILY Ribonuclease H-like 189 339 IPR012337 -
Spst1g00086 388 CDD REX4_like 177 332 IPR037431 GO:0006364|GO:0008408
Spst1g00086 388 MobiDBLite consensus disorder prediction 33 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00086 Spst-Chr1 1445273 1448095 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00086 49 388 C2H2 Transcription Factor Family AT3G27970 71.920 0.0 548
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00086 - - gmx:100813973 666.766