Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00084 ATGCTTCCACTGCAATTCGGTGCACGCCCTCACTACACTCCGTCGCTGTTTTTGAGTAGCTCCAACGCGCGTTCCTCCTCTCGCCTCCTCTACAACAACAGAAACAACAAGATGTACCTTCTTCGCTCCAACGTGGGAACCCTCAACCTTAAGGTTTTCGCTGCGTCTGGCAGCTCAGCATTCAAGATGAACCTCAACGAATACCTCGTCACTCTCGAGAAGCCCCTCGGCATCCGATTCGCTCTAACCGCGGACGGCAAAATCATTGTCCACTCTCTCACCAAAGGGGGTAATGCCGAGAGGTCCAGGATAATTATGGTGGGCGACACTTTGAAGAAAGCTGGCGATTCGTCTCAGAACACTCTCGTTGAGATTAAAGACGTTGGAAATACACAGAAGGTGTTAAATGAGCAAACAAGTTCTTTTAGTTTGGTTCTTGAGAGGCCCACATCTCCTTTTCCCATTCAACTACTGCAAAAGATGAATGATATTGAAATAGTGTTTAATAGAGGGCGAGTTCCTATTGTCACATGGAACAAGACCCTATTGGCATCAAATTTACAACCATCTAGTGAGACCTGTGGGAATTCTGGATTTTTGATGTTCAACTCAAAGTTTCTTAAACAAAATGCCAACAAGTTATTGGGCAACCAATACCAAAATACCATCACCCATGGTGAGAGAAACTTCTTCACCGAACACACAACACAACTTGCTTGTGTTTTTACCGAAGAAGTGTGTGGAGATGGAGATTGGGGTCATGGAAGTTTCCCACTTGAAGAGTATATTCAGGCTCTAGATCGTTCCAAGGATGAGATGTACTATAATCACTCTCTTGGTATGCGTTATAGCAAGATTACAGAGCAAATATATGTGGGATCCTGTATACAAACAGAAGATGATGTAGAAACCTTGTCAAACGTTGAGGGAGTTACTGCTGTTCTGAACTTTCAAAGTGGAACTGAAGCTGAAAATTGGGGAATCAATGCAAAATCCATCAATGGATCCTGTCAAAGGAATAATATTCTCTTGATCAACTATCCTATACGCTATACTAGAAAACAGGCAGTAAATAAGTTCTTCCACATGCACTCAGTCAAGGTTGCATTAGTCACTCACAGAGCCAAGGTTGCCACTGAGACAATAGAAAGATACAGGGATATTCCTAATCCTCACTTCCCAACTCTCAATATTCCATCACAAGCCTCTCTAGGCTCAAACTCAAGTGCTTTTTCAAACAAGGAAGGAGATTCTTATGACATGAGGAAAAAGCTCCCATTTTGTGTGGGGCTTTTATTACGGTTGTTAAGGAAGAATCTTCGTGTTTTTGTTACCTGCACTTCTGGGTTTGATCGGTCTCCTGCTTGTGTGATTGCCTATCTACATTGGATGACAGATGTTTCCCTTCATGCAGCATATACTTGGGTCACAGGGATGCACACTTGCAGACCTGACAGGCCGGCAATTGCATGGGCAACATGGGATCTTATAGCTATGGTTGAAAATGGCAAACATGATGGACCTCCTACACATGCTGTCACATTTGTGTGGAATGGTCATGAGGGAGAGGATGTAACTTTGGTAGGAGACTTCACTGGAAATTGGAAAGAACCACTCAAGGCAAAGCACCTAGGTGGATCAAGACATGAAGTAGAAGTTAAACTTCCACAAGGAAAGTATTACTACAAGTTCATCGTAAATGGACAATGGAAGCATTCAACTGCTTCACCAGCCGAAAGGGATGACAGGGGAAATGTTAACAATATAATTGTGATTGGTGAAACTGCTAACGTTCGGCCTTCTGTTCAGCACCAGCAGAAAGATGCTAACGTTGTGAAGGTGATTGAAAGGCCATTGAATGAAAAAGAGCGGTTTATGCTGGCAAAAGCAGCTCGTTGTATTGCTTTCTCTATCTGTCCAATCACATTAGCCCCCAAATAG 1941 0.4328 MLPLQFGARPHYTPSLFLSSSNARSSSRLLYNNRNNKMYLLRSNVGTLNLKVFAASGSSAFKMNLNEYLVTLEKPLGIRFALTADGKIIVHSLTKGGNAERSRIIMVGDTLKKAGDSSQNTLVEIKDVGNTQKVLNEQTSSFSLVLERPTSPFPIQLLQKMNDIEIVFNRGRVPIVTWNKTLLASNLQPSSETCGNSGFLMFNSKFLKQNANKLLGNQYQNTITHGERNFFTEHTTQLACVFTEEVCGDGDWGHGSFPLEEYIQALDRSKDEMYYNHSLGMRYSKITEQIYVGSCIQTEDDVETLSNVEGVTAVLNFQSGTEAENWGINAKSINGSCQRNNILLINYPIRYTRKQAVNKFFHMHSVKVALVTHRAKVATETIERYRDIPNPHFPTLNIPSQASLGSNSSAFSNKEGDSYDMRKKLPFCVGLLLRLLRKNLRVFVTCTSGFDRSPACVIAYLHWMTDVSLHAAYTWVTGMHTCRPDRPAIAWATWDLIAMVENGKHDGPPTHAVTFVWNGHEGEDVTLVGDFTGNWKEPLKAKHLGGSRHEVEVKLPQGKYYYKFIVNGQWKHSTASPAERDDRGNVNNIIVIGETANVRPSVQHQQKDANVVKVIERPLNEKERFMLAKAARCIAFSICPITLAPK 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00084 646 FunFam Phosphoglucan phosphatase LSF1, chloroplastic 500 596 - -
Spst1g00084 646 SUPERFAMILY E set domains 510 593 IPR014756 -
Spst1g00084 646 Pfam Glycogen recognition site of AMP-activated protein kinase 513 595 IPR032640 -
Spst1g00084 646 PANTHER PHOSPHOGLUCAN PHOSPHATASE LSF1, CHLOROPLASTIC 412 644 - -
Spst1g00084 646 SUPERFAMILY PDZ domain-like 72 167 IPR036034 GO:0005515
Spst1g00084 646 CDD E_set_AMPKbeta_like_N 513 592 - -
Spst1g00084 646 Gene3D Protein tyrosine phosphatase superfamily 272 506 IPR029021 -
Spst1g00084 646 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 273 479 IPR029021 -
Spst1g00084 646 Gene3D Immunoglobulins 507 592 IPR013783 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00084 414 646 Protein tyrosine phosphatase (PTP) family AT3G01510 76.824 5.68e-133 396
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00084 - - cmos:111435043 711.449