Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00076 ATGATTGATCGTCATCATGCTTCAACAGGTCTTAAACGTACTGGAAAGAGCTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCCGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTCTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTTAGCAAATAATAAGGAATATGCATCAGTGATATATATCATGAAAAAACCAGAGAGAGAAAGAGTTGTAAGCCCCTGCTACAAAGCAAAGGCATACATCAAAGGAAACTCAGAAATTCAGCATCTTGCGTACCTCCACAATGATCGTTTTATAAGTGAGTCCAACATATGGTGGTCCAAAATTGCCAAGCAACTACCCGGAAGGACCGATAATGAGATCAAGAACTTTTGGAGGACTAGGATCCAGAAGCACATGAAGCAAAATGAGAGATGCCAGCAACAGAGTAATTCTGAGACAAATGATCACCAAGCTTGCACTAGCCAAGTGTCTACCATGGCTGAGCCCATGGAGACCTATTCTCCATCCTGTTATCAAGGAATGTTAGAACCATTTTCAACTCAGTTTCACACAAATCCTGATCATTCCAGTTGTTGTACAAACGACAACAGCAACTACTGGAGCATGGAGGATATCTTATCAATGCAGTTAGCCAATTACTAA 660 0.4258 MIDRHHASTGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRLANNKEYASVIYIMKKPERERVVSPCYKAKAYIKGNSEIQHLAYLHNDRFISESNIWWSKIAKQLPGRTDNEIKNFWRTRIQKHMKQNERCQQQSNSETNDHQACTSQVSTMAEPMETYSPSCYQGMLEPFSTQFHTNPDHSSCCTNDNSNYWSMEDILSMQLANY 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00076 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 30 IPR017930 -
Spst1g00076 219 SUPERFAMILY Homeodomain-like 12 54 IPR009057 -
Spst1g00076 219 Pfam Myb-like DNA-binding domain 111 132 IPR001005 -
Spst1g00076 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 138 IPR017930 -
Spst1g00076 219 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 8 167 IPR044676 GO:0003700|GO:0006355|GO:0043565
Spst1g00076 219 Gene3D - 36 137 - -
Spst1g00076 219 ProSiteProfiles Myb-like domain profile. 27 134 IPR001005 -
Spst1g00076 219 Pfam Myb-like DNA-binding domain 9 40 - -
Spst1g00076 219 SMART sant 31 136 IPR001005 -
Spst1g00076 219 CDD SANT 111 132 IPR001005 -
Spst1g00076 219 Gene3D - 3 31 - -
Spst1g00076 219 SUPERFAMILY Homeodomain-like 109 142 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00076 Spst-Chr1 1243334 1247702 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00076 10 218 MYB Transcription Factor Family AT3G27810 36.797 2.53e-28 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Spst1g00076 Myb_DNA-binding 4.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00076 K09422 - gmx:778048 187.578