Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00074 ACTATAAGTTACATGGCCGAACGAATTGTTGGACAAGGCTCATTTGGTATTGTGTTTCAGGCTAAATGTCTTGAAACTGGAGAAACTGTAGCAATCAAGAAAGTTTTGCAGGATAAAAGATACAAGAACCGTGAATTGCAAACAATGCGCCTTCTTGATCATCCCAATGTTGTATCACTCAAACATTGCTTTTTTTCCACCACAGACAAAGATGAACTCTATCTCAATTTGGTACTTGAATATGTACCTGAGACTGTATATCGTGTGGTGAAGCACTATAGCAAGGCAAATCAGCGGATGCCCCTAATATATGTTAAACTTTACACATATCAGATTTGTAGAGCCTTGGCTTATATTCATGGGTGTGTTGGAGTGTGCCACAGGGACATTAAACCGCAGAACCTACTGGTTAATCCTCATACACATCAAGTCAAACTTTGTGATTTTGGAAGTGCAAAAGTTCTGGTCAAGGGTGAACCTAACATATCTTATATCTGCTCTCGATACTATCGAGCTCCGGAACTCATATTTGGGGCAACAGAGTATACTACTGCAATTGATATGTGGTCTGTTGGTTGTGTTCTTGCTGAGCTACTACTGGGGCAGCCTCTGTTTCCAGGAGAAAGTGGAGTTGATCAACTTGTTGAAATTATCAAGGTACTTGGGACTCCAACTCGTGAGGAAATAAAATGCATGAATCCAAATTACACAGAATTTAAGTTCCCTCAAATCAAAGCTCACCCCTGGCATAAGATATTCCATAAGCGTATGCCCCCAGAAGCAGTAGATCTTGTTTCAAGGCTTCTCCAGTATTCTCCAAATTTACGTAGCACTGCTTTGGATGCATGTATCCACCCATTTTTTGATGAACTCCGCCATCCTAATACTCGTCTCCCTAATGGGCGCCCTTTGCCAGCCCTCTTCAATTTCAAACCTCAAGAGCTGAAGGGAGTGACTTTGGAGCTTCTATGCAAACTTGTCCCAGAACATGCTCGGAAACAGTGTCCATCCCTTAATTTCTAG 1023 0.4174 TISYMAERIVGQGSFGIVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTDKDELYLNLVLEYVPETVYRVVKHYSKANQRMPLIYVKLYTYQICRALAYIHGCVGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDMWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRSTALDACIHPFFDELRHPNTRLPNGRPLPALFNFKPQELKGVTLELLCKLVPEHARKQCPSLNF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00074 340 Gene3D Transferase(Phosphotransferase) domain 1 84 332 - -
Spst1g00074 340 Pfam Protein kinase domain 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00074 340 ProSiteProfiles Protein kinase domain profile. 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00074 340 ProSitePatterns Protein kinases ATP-binding region signature. 10 34 IPR017441 GO:0005524
Spst1g00074 340 FunFam Shaggy-related protein kinase kappa 84 332 - -
Spst1g00074 340 SUPERFAMILY Protein kinase-like (PK-like) 4 312 IPR011009 -
Spst1g00074 340 SMART serkin_6 4 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00074 340 CDD STKc_GSK3 1 291 IPR039192 -
Spst1g00074 340 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Spst1g00074 340 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 1 334 - -
Spst1g00074 340 FunFam Glycogen synthase kinase-3 beta 1 83 - -
Spst1g00074 340 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00074 Spst-Chr1 1174706 1178361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00074 10 291 Core Cell Cycle Gene Families AT1G76540 35.172 4.82e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Spst1g00074 Pkinase 8.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00074 K27413 - qsa:O6P43_004640 685.641