Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00072 ATGAACACCGAAAGCATCACCTCAAACCCAAGCCACCACAAGAATCCATCGTCATGGGTTCTCTTCATCACACTGTTTTTCTCATATCTCTCCCTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGACTGTACTGTGGAAGCACCAAGGCCCCGCTGAAAGCCAACTACATCCCAAGTTTCATCAAGGAAATGGAGAGCCTCTCGCAATTGGTGACCAGCCACAACTGGGGCACTCACTTTGAGAACATTTCAGGTTCGTCAATTCCCATTTATGGCTTCGCACAATGCTTCGGGGACCTGTCCCACACAGATTGTCTTCTCTGCTACGCCGCAAGCCGCACCAAGCTCCCACGCTGCCTCCCTTCTGTCTCTGCGCGAATCTACCTTGATGGCTGCTTCTTGCGCTATGATAACTACAGCTTCTACGCGGAGGACACTGACCCTTTGAGGGACACGGTGAACTGCACCTCTCAGCATGGGATGGCTGTCGATGAGACTGAGAGGCTGGAGCTTGAGGAGAGACTTGAAAGAGTGGTTGAGAGTGTGGGCAACATGGCTGTGGCAAAAGGTGGTAGCTTTGCTGTGGGAGAGGTTGAGGGGGTTTATGCATTGGCACAGTGCTGGAACACTGTTGGGAGTGATGGCTGCAGAGAGTGCTTGAGGAAAGCTGGGAGGGAGGTCAGAGGGTGCTTGCCAAAGAGGGATGGGAGGGCCTTGAATGCTGGCTGTTATTTGCGGTATTCAATAGACAAGTTCTACAATGAAGATGGTGATGCAGTTGGTAAAAATGGGTTCTTCAGAAGAGGAGGAGTCATAGTAGCAGAAGTGTTAGCAGCAACTGCAGTTTTAATGCTTGCTCTCTCTGCCTCCTATTTAGCCTTCACGAAATTAACTAAGATAAAGAAAGAAAACAACAATCTTTGTCAGATTTCCTCTTCCATAAGAAAATCTAGCTTGAATTACAAGTATGAGACTCTTGAGAAGGCCACAGATTATTTCAACTCTTCAAGAAAAATAGGTCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATGGGAAACTTGTTGCGGTTAAGAGATTAATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATCTTCGAAAATAACAGAACTCAGATTCTGAACTGGAAGCAGAGGTTTAACATCATTCTTGGAACGGCCGAAGGGCTTGCATATCTTCATGAAGGCACCAAAATAAGAATCATCCATCGAGACATCAAAAGCAGCAATGTTCTTTTGGATGAGAATCTCACTCCCAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGAGCTGATAAGTCACATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATTCGAGGACAACTTACAGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTGGAGATTGTGAGTGGCAGGAGGAACAATGTCTTCAGAGAGGACTCTGGCTCGTTTCTACAAACTGTTTGGAAACATTACCGATCAAACACATTAACTGAAGCTGTTGATCCTTGCTTGGGAGATGATTTTCCTGCAACTGAAGCATCAAGGGTGTTTAAAATTGGATTGCTTTGCACACAAGCTTCTGCCTCCCTAAGACCATCCATGTCTCAAGTTGTTTACATGCTAATTAATTCAAATGAAGACGTTCCCACCCCAAATCAACCCCCATTTTTGAACACTGGAGTGCTAGACTCAGATAGTTCCATCAAGTCCTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGTATCCTACAGCTACTCAGAGTCATCTAGTTCACGCAACTCAGATGGGCCATCAAGAAGTGAAGAATCAATTGTCCAAGTTTGA 2022 0.452 MNTESITSNPSHHKNPSSWVLFITLFFSYLSLSLSDPRITEAGLYCGSTKAPLKANYIPSFIKEMESLSQLVTSHNWGTHFENISGSSIPIYGFAQCFGDLSHTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYAEDTDPLRDTVNCTSQHGMAVDETERLELEERLERVVESVGNMAVAKGGSFAVGEVEGVYALAQCWNTVGSDGCRECLRKAGREVRGCLPKRDGRALNAGCYLRYSIDKFYNEDGDAVGKNGFFRRGGVIVAEVLAATAVLMLALSASYLAFTKLTKIKKENNNLCQISSSIRKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNGKLVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFENNRTQILNWKQRFNIILGTAEGLAYLHEGTKIRIIHRDIKSSNVLLDENLTPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVSGRRNNVFREDSGSFLQTVWKHYRSNTLTEAVDPCLGDDFPATEASRVFKIGLLCTQASASLRPSMSQVVYMLINSNEDVPTPNQPPFLNTGVLDSDSSIKSYSTNSFISNALKKIGVSYSYSESSSSRNSDGPSRSEESIVQV 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00072 673 Pfam Salt stress response/antifungal 63 140 IPR002902 -
Spst1g00072 673 Pfam Salt stress response/antifungal 172 249 IPR002902 -
Spst1g00072 673 ProSiteProfiles Gnk2-homologous domain profile. 39 142 IPR002902 -
Spst1g00072 673 Gene3D - 156 253 IPR038408 -
Spst1g00072 673 Gene3D - 42 142 IPR038408 -
Spst1g00072 673 Gene3D Transferase(Phosphotransferase) domain 1 410 613 - -
Spst1g00072 673 CDD STKc_IRAK 340 602 - -
Spst1g00072 673 FunFam Cysteine-rich receptor-like protein kinase 2 410 610 - -
Spst1g00072 673 FunFam Cysteine-rich receptor-like protein kinase 2 39 142 - -
Spst1g00072 673 Gene3D Phosphorylase Kinase; domain 1 294 409 - -
Spst1g00072 673 FunFam Cysteine-rich receptor-like protein kinase 3 154 253 - -
Spst1g00072 673 MobiDBLite consensus disorder prediction 651 673 - -
Spst1g00072 673 SMART serkin_6 334 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00072 673 Pfam Protein tyrosine and serine/threonine kinase 337 601 IPR001245 GO:0004672|GO:0006468
Spst1g00072 673 FunFam Cysteine-rich receptor-like protein kinase 2 300 409 - -
Spst1g00072 673 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 92 650 - -
Spst1g00072 673 ProSiteProfiles Gnk2-homologous domain profile. 151 253 IPR002902 -
Spst1g00072 673 ProSitePatterns Serine/Threonine protein kinases active-site signature. 455 467 IPR008271 GO:0004672|GO:0006468
Spst1g00072 673 ProSiteProfiles Protein kinase domain profile. 334 618 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00072 673 SUPERFAMILY Protein kinase-like (PK-like) 318 631 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00072 Spst-Chr1 1131601 1135239 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00072 20 499 Receptor kinase-like Gene Family AT5G40380 57.143 0.0 547
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Spst1g00072 Pkinase 7.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00072 - - gmx:100790404 1101.66