Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00069 ATGGAGTTTGGTCCAAGCTTCCCTGAGAAAATTCCCTACCTTTCTGGGATTTTCCCAGAAATCAAATCAGAGATCCCTGTGTCAGAAGAGAACACCAGCTTCATGTACCAAAACAATTTCACCTATTTTCAGCAACACCATTTCCTGAATGAGCCAAACCATGGTCACCCTGAAAGTTTTTTCCCAGAGGGTTCTCCCTCCATCACCACCCCATTTTTCTCTTTGTCCTCAGCAACTCCTTCCTCAGGTGGTACATCTTCCTACAAACCCACTTATCCCAATGCGTCCCTCAAAGGAGGCTTTGTCAACCCCTACTATCCCATGTCATATGCACCAAACAGCACTAATGTTGAATCCATGCATGGTCACCCCAACAAGGTCATCTGGGACTTTTCCCAGAAAGCTCCACTTCACTCTGGTGCAAGTGCAACTTCAGATCCTCAGGTGCAGAAGAAGTGTAATGGCCAAATTCAGCACAGGATGACCAACATAATCAAAGGCCAGTGGAGTGCTGAAGAGGACAGTGTCCTTGTCCAATTGGTGAAACGTTTCGGGATCAAAAAATGGTCTCAGATAGCTAGGTTGCTGAATGGCAGGGTTGGAAAACAGTGCAGAGAAAGGTGGCATAATCATCTCCGGCCAAACATTAGGAAGGAATCATGGAGCGAAGAGGAGGACAAAATCCTGATCGAAGCTCACAGGGAACTCGGAAACAAATGGGCAGAGATTGCAAGGAGAATGCCTGGCAGGACTGAAAACACCATCAAGAACCACTGGAACGCCACAAAGCGGCGCCAGAAGGCCAAAAGACAGAGGAACAAGCGCAGGGGCACCAAGGGTGCACCCACGCTTCTGGAGAGCTACATAAAGAAAGTCACTGCAGCGGAAGAGGCTGAGAAGGAGTTGAAGAACTCTATGAGCAAGATGAACCTGAACGGCACCACCACCAATTCGGGTCTCTTTCGGGTTAGGTATGAGAGCTCAGAGGGTGACTTCAGCTCGGAGGATGACGAGGTTGGATGGGACCTGCAGCACCACGTGCCATGTGGTGGTGGTGGCGGCGGCTATGTGCCACTGATGGTGAACTCTGGCGAAGAGAGCACGATTGATTACGAGGTTGCCATGCAGATGGAGCCGGAGGTTCAGCTGAGGAAAGAGATGGATCTGATGGAGATGATCTACAGAAAAGGTTAA 1194 0.4941 MEFGPSFPEKIPYLSGIFPEIKSEIPVSEENTSFMYQNNFTYFQQHHFLNEPNHGHPESFFPEGSPSITTPFFSLSSATPSSGGTSSYKPTYPNASLKGGFVNPYYPMSYAPNSTNVESMHGHPNKVIWDFSQKAPLHSGASATSDPQVQKKCNGQIQHRMTNIIKGQWSAEEDSVLVQLVKRFGIKKWSQIARLLNGRVGKQCRERWHNHLRPNIRKESWSEEEDKILIEAHRELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRGTKGAPTLLESYIKKVTAAEEAEKELKNSMSKMNLNGTTTNSGLFRVRYESSEGDFSSEDDEVGWDLQHHVPCGGGGGGYVPLMVNSGEESTIDYEVAMQMEPEVQLRKEMDLMEMIYRKG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00069 397 Coils Coil 285 312 - -
Spst1g00069 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 267 IPR017930 -
Spst1g00069 397 FunFam Transcriptional activator Myb isoform A 165 218 - -
Spst1g00069 397 Gene3D - 165 217 - -
Spst1g00069 397 ProSiteProfiles Myb-like domain profile. 213 263 IPR001005 -
Spst1g00069 397 PANTHER MYB PROTEIN-RELATED 144 289 - -
Spst1g00069 397 MobiDBLite consensus disorder prediction 261 277 - -
Spst1g00069 397 MobiDBLite consensus disorder prediction 261 280 - -
Spst1g00069 397 CDD SANT 220 263 IPR001005 -
Spst1g00069 397 SMART sant 165 214 IPR001005 -
Spst1g00069 397 SMART sant 217 265 IPR001005 -
Spst1g00069 397 Gene3D - 219 282 - -
Spst1g00069 397 SUPERFAMILY Homeodomain-like 163 259 IPR009057 -
Spst1g00069 397 ProSiteProfiles Myb-like domain profile. 161 212 IPR001005 -
Spst1g00069 397 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 161 212 IPR017930 -
Spst1g00069 397 Pfam Myb-like DNA-binding domain 169 227 - -
Spst1g00069 397 CDD SANT 169 212 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00069 Spst-Chr1 1080610 1083757 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00069 162 292 MYB Transcription Factor Family AT4G18770 66.412 1.12e-60 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Spst1g00069 Myb_DNA-bind_6 2.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00069 K09422 - gmx:100793032 454.521