Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00063 ATGGAGTTTGGAGGGAACATGTTCTGCCTCGGCAACAGAGACCAAAATGGAAACACTAACGGTAACACTTTCGCTTGGGATTCATGGGAAACAACTACTTCTAATAATAACAACAACAGTACAAGGTTGGTCAACGCTTTCAACGCCCCCGTCACTGGAGTTGCCGTGCCGGAGGGCTCCGCCGCCAACCGCCACGAGGCGGCGGGTTTGGCCAACGCTCTCATGTTCCTCCCTCAAAACGGCGGCTTTTTGCGTCACCGCCAGCAGCAGCAGCATCCGTACAGTGGGGATGGGTCCCACGTGCACCCCGACCCGCACCTCATGTGCTTGAAGCTTGGGAAGAGACATTACTTCGAGGACGCTTGTGGAAGTGGAACAGTTGCTGCTGCTGCTGCTGCTGCTACCACTTTTGGCGGGGGGTTGGTGTTAGGGGATAAGAGAGGGAAAGGAGGGTATTCCGGCGGCGGGGCTGCCGTAAAGGCGGTGGGTTTGTCGGCGGCGACGGTGCCGAGGTGTCAGGTGGAAGGATGCCAGGTGGCGCTGGTGAACGCAAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCCAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGGAGACTTGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCTAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCGTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCTGCATTGCGGGAATTGATAGCAGAAAACCGGGCAGCCATCATGGCGAGGCAGTTTGTTTCAGACAGAGATTGGCATCTTCACCATCATGCAGTGGAAGACTTGAAGGAGATCCAACCTGAGTCCAATTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1014 0.5375 MEFGGNMFCLGNRDQNGNTNGNTFAWDSWETTTSNNNNNSTRLVNAFNAPVTGVAVPEGSAANRHEAAGLANALMFLPQNGGFLRHRQQQQHPYSGDGSHVHPDPHLMCLKLGKRHYFEDACGSGTVAAAAAAATTFGGGLVLGDKRGKGGYSGGGAAVKAVGLSAATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHLHHHAVEDLKEIQPESNYFPQQMFPQTQ 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00063 337 Gene3D - 164 233 IPR036893 GO:0003677|GO:0005634
Spst1g00063 337 MobiDBLite consensus disorder prediction 236 257 - -
Spst1g00063 337 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677
Spst1g00063 337 Pfam SBP domain 172 245 IPR004333 GO:0003677
Spst1g00063 337 SUPERFAMILY SBT domain 170 251 IPR036893 GO:0003677|GO:0005634
Spst1g00063 337 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 61 277 IPR044817 GO:0003677
Spst1g00063 337 FunFam Squamosa promoter-binding-like protein 14 164 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00063 Spst-Chr1 905440 909781 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00063 108 245 SBP-box Gene Family AT1G27370 51.449 1.31e-40 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst1g00063 SBP 6.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00063 - - var:108327478 557.37