Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00062 ATGTTGGATTACGAATGGGGGAACACATCAATGATTGTACTCGCCGGAAATGAAGGCGCCGCCGGCGAACCCGACCAAACGCGCCGGCAAATCTTCGACCACCATTTCGCCATGCTAACTGACCCCATTCTACACGGCTCAACACCAACAGCCACTACTGGTTTCTCTCATCACCACCCCTTCAACCCACCACAACCGCAACAGCACCAACCCTTCTTGGACCCACGCGCCTTCCAAAGCGCGTCCCCCACTTCCTTCTCCCCACCACCTTCGATGATCTCACTTAACCCAATCCCACCTTTAGCTTCCTCCCACTGTGGGCTTGGGCCTGCCTCCGGGCTTGGATTTCTGCCCATGTCCAAGTCCGGGGATGTCACTTCGCCCATGAACTTCGAGGGCTCTGGTCGTGGTCTCGCACCCGAGCCTGGACCCAGACTTGGACTCAACCTCGGAGGCCGCACTTATTTTGCGGCTTCCAACGACGACGCCGTGGACCAATTCTACCGTTCCAAGATGGTTTCCACCGTGTCGTCGAATTTGCCGCGCTGTCAGGCAGAAGGGTGCAATGCGGACCTCTCCGACGCGAAGCACTACCACCGCCGCCATAAGGTGTGCGAGTTCCACTCCAAGGCCGCCACCGTGGTTGCCGCCGGCTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGACAATGGGAAACGGAGCTGCAGGAAGCGACTGGCAGATCACAATCGTCGCAGAAGAAAAACACAGCAGGCAACCCAAGAAATTCACAAATCTCACCAGCATTCTCTGGACAATGTTACGAGGTCCTTGGCTGAATCTGGAGCTCAAACTTCCTCATCGGTGACGGTGCAAGTGTCACCCCGAGATTATTTCCAGCAAAGACCAGAGCAAGATAGAGGTTCTTCGTCAACATCATTAGGGTCATTGTTTTTCTCAAATGGGACCAATTTGCATGGCTAA 987 0.5471 MLDYEWGNTSMIVLAGNEGAAGEPDQTRRQIFDHHFAMLTDPILHGSTPTATTGFSHHHPFNPPQPQQHQPFLDPRAFQSASPTSFSPPPSMISLNPIPPLASSHCGLGPASGLGFLPMSKSGDVTSPMNFEGSGRGLAPEPGPRLGLNLGGRTYFAASNDDAVDQFYRSKMVSTVSSNLPRCQAEGCNADLSDAKHYHRRHKVCEFHSKAATVVAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQATQEIHKSHQHSLDNVTRSLAESGAQTSSSVTVQVSPRDYFQQRPEQDRGSSSTSLGSLFFSNGTNLHG 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00062 328 FunFam Squamosa promoter-binding-like protein 14 174 244 - -
Spst1g00062 328 Gene3D - 178 244 IPR036893 GO:0003677|GO:0005634
Spst1g00062 328 MobiDBLite consensus disorder prediction 48 88 - -
Spst1g00062 328 MobiDBLite consensus disorder prediction 273 328 - -
Spst1g00062 328 ProSiteProfiles Zinc finger SBP-type profile. 180 257 IPR004333 GO:0003677
Spst1g00062 328 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 133 304 IPR044817 GO:0003677
Spst1g00062 328 Pfam SBP domain 183 256 IPR004333 GO:0003677
Spst1g00062 328 MobiDBLite consensus disorder prediction 48 63 - -
Spst1g00062 328 SUPERFAMILY SBT domain 181 260 IPR036893 GO:0003677|GO:0005634
Spst1g00062 328 MobiDBLite consensus disorder prediction 249 328 - -
Spst1g00062 328 MobiDBLite consensus disorder prediction 72 88 - -
Spst1g00062 328 MobiDBLite consensus disorder prediction 254 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00062 Spst-Chr1 873667 875684 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00062 1 230 SBP-box Gene Family AT1G02065 41.860 1.37e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Spst1g00062 SBP 4.4e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00062 - - var:108328505 457.603