Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00056 ATGTATGGTGGTTGCATACCAAATTTTCAAGTCATTTGTCAAGGAGGTGGTCACATGGGTTCACAAGATGATTACATAATGAAAGAGTTGCAAAATACTGATTGGCCAAAATCTGAATATGAAACAACAAGTCCTATTACTCTAGAAGAATGTACAAAATCTTGTTTGCAAGATTGCTTATGTGTGTTGGTTACTTTCAGTGGAAATTCTTGTTGGAAGAAGAAGCTACCGCTCACAAATGGGAGAAGAGATAAAGGAGTAAATGGAACTTCTATTATAAAACTGATGAAAAATAATGAATTCTTGATCTCTTTCCCAAACCAAAAGGATCATGAGACCTTGGTCATTATTATATCAGTTCTTTTAGGCTTCTCTGTGTTGGTCATTTTAATGTTGGTTGGTGCAATATATTTTGGTTTCTCCTACAACCGTAAGAAGATCAAAAGTAGTAGAACCAAAAATCATGTTGTTGATAATATCTTGCGTAACTTCACCTTCGAGGAACTTGTAGAAGCAACAAGAAACTTTAGTGATGAATTGGGAAGGGGATCTTTTAGCATTGTCTACAAAGGAACAACAAAGATGACTAGTGTGGCTGTTAAGAAATTAGACAAGTTGTTTCAAGACAATGACAAGGAATTTCAGACAGAAGTGAATGTAATAGGTCAAACTCATCATAGGAATTTAGTTCGTCTACTTGGATATTGTAATGAAGGACAACACCGAATTTTGGTATATGAGTTTATGAGCAATGGCACTTTAGCTAGCTTCCTTTTCACCCCTTTGAAATCAAATTGGAGACAACGAGTTGACATTGCTAATGGGATTGCGAGAGGTCTTGTTTACTTGCATGAGGAATGTTGCACCCAAATCATCCACTGTGACATAAAGCCACAAAATATCCTTCTAGATGATCTATGTAATGCCAGAATTTCTGATTTCGGATTAGCAAAGCTGTTACTGATCAACCAAAGCCACACTGAAACTGGAATTAGGGGAACGAAGGGGTATGTTGCACCAGATTGGTTTAGAAGTTCACCAATCACTACTAAGGTTGACACTTATAGTTTTGGTGTGGTGCTATTAGAGATAATTTGTTGTAGGAGGAATGTAGAAAAGGAACTTGTTGATGAAGAAAAAGGGATATTGACGGATTGGGCATATGATTGCTACAAGACTAGAAGATTAGACATTCTTCTAGAAAATGATGATGAAGCTATTAATAACATTAAGACTTTTGAAAAATTTGTAATGATAGCTATTTGGTGCATTCATGAAGATCCCTCTCTTAGGCCAACAATGAAGAAGGTTTTGCTAATGCTGGAAGGAATAGTTGAAGTTTCAATACCCCCAAATCCCTACCTTTATGGTTCTACTGGTTAA 1383 0.3623 MYGGCIPNFQVICQGGGHMGSQDDYIMKELQNTDWPKSEYETTSPITLEECTKSCLQDCLCVLVTFSGNSCWKKKLPLTNGRRDKGVNGTSIIKLMKNNEFLISFPNQKDHETLVIIISVLLGFSVLVILMLVGAIYFGFSYNRKKIKSSRTKNHVVDNILRNFTFEELVEATRNFSDELGRGSFSIVYKGTTKMTSVAVKKLDKLFQDNDKEFQTEVNVIGQTHHRNLVRLLGYCNEGQHRILVYEFMSNGTLASFLFTPLKSNWRQRVDIANGIARGLVYLHEECCTQIIHCDIKPQNILLDDLCNARISDFGLAKLLLINQSHTETGIRGTKGYVAPDWFRSSPITTKVDTYSFGVVLLEIICCRRNVEKELVDEEKGILTDWAYDCYKTRRLDILLENDDEAINNIKTFEKFVMIAIWCIHEDPSLRPTMKKVLLMLEGIVEVSIPPNPYLYGSTG 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00056 460 CDD PAN_AP_plant 9 95 - -
Spst1g00056 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 291 303 IPR008271 GO:0004672|GO:0006468
Spst1g00056 460 SUPERFAMILY Protein kinase-like (PK-like) 157 442 IPR011009 -
Spst1g00056 460 CDD STKc_IRAK 180 444 - -
Spst1g00056 460 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 2 452 - -
Spst1g00056 460 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 249 449 - -
Spst1g00056 460 ProSitePatterns Protein kinases ATP-binding region signature. 180 202 IPR017441 GO:0005524
Spst1g00056 460 Gene3D Transferase(Phosphotransferase) domain 1 249 449 - -
Spst1g00056 460 FunFam S-receptor-like serine/threonine-protein kinase 143 248 - -
Spst1g00056 460 SMART serkin_6 174 441 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00056 460 Pfam Protein kinase domain 177 438 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00056 460 ProSiteProfiles Protein kinase domain profile. 174 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00056 460 Gene3D Phosphorylase Kinase; domain 1 137 248 - -
Spst1g00056 460 Pfam PAN-like domain 26 72 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00056 Spst-Chr1 792916 794298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00056 107 446 Receptor kinase-like Gene Family AT5G45780 37.536 2.55e-69 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Spst1g00056 Pkinase 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00056 - - gmx:100796619 796.193