Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00051 ATGAATCTTAGCTATGAACAGAGACTTCAAGTTGTTGCCAAAATCATATTAGACGACGAGGCACGCGCCGGCGACGCGCTGCCATGTGAGGAAGAACTTGGGCTCAGGGCGACCCTCAAACCGCACCAGGTGGAGGGGGTTTCCTGGCTAATACGGAGGTACAAACTCGGCGTCAACGTTGTCCTCGTGGTTATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACTCCTAAACTAGAACTCTTCAAATATGTTGGTGATAAAGAAAATAGGCGCAATCTACGCACGAAAATACATGAATATGTAACAAGGCTGTCATCAGCAATGAATGTCTTGTTGCCTTTTGATGTGCTATTAACGTCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATTCCATGGCAGTATGCAATCATTGATGAAGCTCAGAGGCTTAAGAATCCATCTAGTGTTTTGTTTAATGTTCTCAAAGACCGCTACATAATGCCACGAAGGTTGTTGATGACTGGCACGCCTATTCAAAACAATCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGAAATCAGTGGTCTTGCATCAGTTCATGTTGCTCCAAAGGTAGAGGAGAGGCTTAAAATTTTAAGAAGTGTATTGGGAGCCTTTATGCTTCGACGCACCAAGTCAAGGCTTATCAAGTGTGGAAATTTGGTTCTACCACCTCTCACTGAAACAACTGTGTTAGTTCCCCTTGTGATCCTGCAGAAAAAGGTCTATATGTCAATATTGAGGAAGGAACTTCATAAGCTACTTGCTTTATCCTCTGGAACTTCAAATCACCAGTCACTACAGAATATTGTGATACAACTAAGAAAAGCATGCAGCCATCCATATCTCTTTCCGTGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTACTTATTCTGGACCAACTTCTTCAGAAGTTACATTATTCTGGACACCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTGGACATTTTGCAAGATTTTCTGGAGTTGCGAAAGTATTCTTATGAGCGACTTGATGGATCAGTTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGTAGCTCATCTACTAATACAGACTTGACTTCTGAAGTTGAACAAAATGGAGCATTTGTGTTTATGATCTCAACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTATGAGCAAGATTGGAATCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAATCTTGTTACAGAGCAGACAGTGGAGGAAGTAATTATGCGAAGGGCAGAGAGAAAATTGCTTCTGAGCATCAATGTTATCGGTGATAACATTCTCAAACATGAAGATAAAGAACTATCTGAAGTTGGAACTGGTGCTTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCTACTGAGATCACTGATGGAAATCATGGGGATATGAACTTTCCAGAAATTAGTGTTATGGCTGACAGGGTGCTTGCCTTGCGTGATGAACAAATACTTAATAAAGATGAAAGGAAATTTGAGGTCAATCCAAGAAACATTTTAAAAGGTGATGATGTTAAGGAAGGAGGTTCTACTTCTCTCTCTTATGATCTTGGTCTTGATGAGGCTTCATATATTTCTTGGGTTAAAAAATTTGAGGAACTGTCTAAGTCAAGTTGCGACTCAATGATGGACTTGAGGAGCAAAAGAAACTTAGACGAGCAAAAGAGTCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCTAGGTGGAAAGCTCTTGGATATCAATCATTGAATGTAAAAGACACTCTCAGCCCAACAGACAATAACATCACATCAGCTATTGGGTCTGTTCATTTTCTGTATGGAGATTGTACAGCTCCATTAAATGTTTGTTCGTCTGAACCTGCTATGATTTTCAGCTGCGTTGATACCTCTGGACATTGGGGCCGTGGTGGAATGTTTGACGCACTGTCCAAACTTTCTACAAGCGTCGGTGATGCATATGAACGGGCGTCTGAACATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGGTGAGCAATCTAGTGATACAAAATAA 2274 0.4129 MNLSYEQRLQVVAKIILDDEARAGDALPCEEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLVVICPLSVTDGWVSEIVKFTPKLELFKYVGDKENRRNLRTKIHEYVTRLSSAMNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYIMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKEISGLASVHVAPKVEERLKILRSVLGAFMLRRTKSRLIKCGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNHQSLQNIVIQLRKACSHPYLFPCIEPEPYEEGEHLVQASGKLLILDQLLQKLHYSGHRVLLFAQMTHTLDILQDFLELRKYSYERLDGSVRAEERFAAIRSFSSSSTNTDLTSEVEQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEQTVEEVIMRRAERKLLLSINVIGDNILKHEDKELSEVGTGALKSIIFGLHMFDPTEITDGNHGDMNFPEISVMADRVLALRDEQILNKDERKFEVNPRNILKGDDVKEGGSTSLSYDLGLDEASYISWVKKFEELSKSSCDSMMDLRSKRNLDEQKSLKLESARKKAEEKKLSRWKALGYQSLNVKDTLSPTDNNITSAIGSVHFLYGDCTAPLNVCSSEPAMIFSCVDTSGHWGRGGMFDALSKLSTSVGDAYERASEHGDLHLGDLHLIRLDGEQSSDTK 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00051 757 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 1-LIKE 624 755 IPR031053 GO:0003678|GO:0006281|GO:0006338
Spst1g00051 757 Pfam SNF2-related domain 62 317 IPR000330 GO:0005524|GO:0140658
Spst1g00051 757 SMART ultradead3 35 207 IPR014001 -
Spst1g00051 757 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 513 IPR001650 -
Spst1g00051 757 Gene3D - 256 527 IPR027417 -
Spst1g00051 757 FunFam Putative helicase CHR10 255 574 - -
Spst1g00051 757 SMART helicmild6 367 462 IPR001650 -
Spst1g00051 757 Gene3D - 62 255 IPR038718 -
Spst1g00051 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 510 IPR027417 -
Spst1g00051 757 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 244 IPR027417 -
Spst1g00051 757 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 63 199 IPR014001 -
Spst1g00051 757 Gene3D Leucine Aminopeptidase, subunit E, domain 1 674 754 IPR043472 -
Spst1g00051 757 Pfam Helicase conserved C-terminal domain 338 462 IPR001650 -
Spst1g00051 757 SUPERFAMILY Macro domain-like 678 750 IPR043472 -
Spst1g00051 757 CDD SF2_C_SNF 330 473 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00051 Spst-Chr1 736993 748099 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00051 31 521 RAD5 or RAD16-like Gene Family AT1G02670 23.339 1.92e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst1g00051 SNF2_N 3.7e-39 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00051 K20092 - gmx:100797182 1232.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00051 1 736993 748099 Spst1g00051 1 736993 748099 ECH