Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00048 ATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTTCTCCTCGTCCACATCCATGACCATCTCCACCACCACCACCACCATCTCATCATCATCGTCATCATCACCAACATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCAGGACTCCCAAACAAGTTCTCCAGATGATTCAACAGCTGCTCAAAATGAAAACACCCCAAATAGCAAGGAATGCAAGAAAAGACAAAGAAGTGAGAATGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATCCGTGAGCCTAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCCAGAGCACACGATGTGGCAGCTTTAGCCATCAAGGGTCATTCAGCTTTCCTCAATTTCCCCAATTTGGCTCAAGATCTTCCAAGGCCCATCAGCACATCCCCCAAGGACATTCAAGCTGCAGCAGCAAAAGCAGCAACCACTTTCTTCGATGATGATAAGCATTGTGAAGCTCAAAAGGCCCAACAAAACCATGCAGAACAAGCTTCATCTTCAACTCTATGCATGGACAATACTGAGGCAGAGCAAGTTCAAACAGAACAAGCTTCATCTTCAACTCTATCCATAGACACTACTCAAGTGACTTCAACTTCTCACTCATCTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTCTCCGATTCTTCTTCTTGGCGTCTATGTGCCTCTGATAGTGGATTCAGGCTTGAGGAGCAATTTTTGTGGGAGAATTACTAG 840 0.4536 MESDAGENLFGTFFSSSTSMTISTTTTTISSSSSSSPTSSTSSSNSCTKQDSQTSSPDDSTAAQNENTPNSKECKKRQRSENDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAFLNFPNLAQDLPRPISTSPKDIQAAAAKAATTFFDDDKHCEAQKAQQNHAEQASSSTLCMDNTEAEQVQTEQASSSTLSIDTTQVTSTSHSSADDDTLFDLPDLFPDGNNGLFSDSSSWRLCASDSGFRLEEQFLWENY 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00048 279 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 66 247 - -
Spst1g00048 279 MobiDBLite consensus disorder prediction 1 90 - -
Spst1g00048 279 Gene3D AP2/ERF domain 88 146 IPR036955 GO:0003700|GO:0006355
Spst1g00048 279 ProSiteProfiles AP2/ERF domain profile. 88 145 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 CDD AP2 87 147 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 PRINTS Ethylene responsive element binding protein signature 89 100 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 PRINTS Ethylene responsive element binding protein signature 111 127 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 MobiDBLite consensus disorder prediction 9 69 - -
Spst1g00048 279 SMART rav1_2 88 151 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 SUPERFAMILY DNA-binding domain 88 146 IPR016177 GO:0003677
Spst1g00048 279 FunFam Ethylene-responsive transcription factor 2 87 146 - -
Spst1g00048 279 Pfam AP2 domain 87 138 IPR001471 GO:0003700|GO:0006355
Spst1g00048 279 MobiDBLite consensus disorder prediction 70 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00048 Spst-Chr1 672979 673818 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00048 76 275 AP2-EREBP Transcription Factor Family AT2G44940 51.675 1.02e-66 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst1g00048 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00048 - - pvu:PHAVU_008G141000g 420.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00048 1 672979 673818 Spst1g00048 1 672979 673818 ECH