Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00039 ATGCAGAAACTGCCAACTGGAATTTCCCTTGACACCATTTCGGACGGTTATGACAGTGGTAGGATTGGAGAAGCAAAGAGCTTAAGGGTCTACTTGGATTTCTTTTGGAAAGTTGGGCCAAAGACTCTTGATGAGCTTCTTGAGAAGCTGGCTAGATCAGGCTACCCTATTGATTGTCTTATTTGTGATTCATTCATGCCTTGGGCTATGGAAGTTGCAAGGAGTTTCGGGATTGTTGGGGTACTTTTTCTCACCCAAAATATGGTTGTGAATAGTATATACTATCATGTCCATTTGGGAAAGTTGCAAGCTCCCCTAACAGAAAATGAGATTTCTCTTCCTGCTCAGCCCCCACTTCAACTTGGGGACATGCCTTCTTTCTTCTTTAACTATGTTGAAGATCCTGCTTTTCTTGATTTCTTAGTAGACAAGCATACCAAAGATGAGGAAGACTATGGTGTTGAACAAGTCAGAGATGAAGAATGCATCAAATGGTTAGATGATAAGCCAAAAGAGGTGGTTGTTTATGTTTCTTTTGGGAGTATGGCAGTACTTGAAGAGGAACAAATAGAGGAATTAGCTTATGGTTTAAGAGAAAGTGGAAGTTACTTCTTGTGGGTGGTTAGAGAATCTGAAGAGACCAAGCTCCCTAAAGGCTTTGAAAAGAAGTCAGAGAAGGGCTTGGTAGTGCCATGGTGCTCTCAGCTAAAAGTTTTAGCACATGAAGCTGTGGGGTGCTTTGTAACACATTGTGGTTGGAACTCTACATTAGAAGCTTTGTGCTTGGGAGTTCCAATGGTTGCAATGCCACAAGAGGCAGACCAAAGCACCAATGCTAAGCATATTGAAGATGTTTGGAAGGTGGGAACCAAAGCTTCAGTTGATGGAAAACATTGGAAGACTGTGGCGGCAAATGCAGTTGGTGAGGGTGGAACCATGGCGGTTCTCTACATGGAAGCAGTCGTCGTCTCTGAGCTTTGGAAGCTGGGAATGACTTCACAACTTGACCATGGGGATGGTTCTATTGATGATAGTGCATCAACCCCAATCCACTTTTTCAGGATCATGCTTCCTCACAACCTTCTACAAGGAACTTTAAGGCTTCCGACAAGGTTTGTGAGCAAATATGGAAAACACTTATCCAACACAGTACATCTTAAGCTTCCAAATGGTGCAGAATGGAAAGTAAATTTGGAGAAGCGTGATGGTAGTGTTTGGTTTCAACAAGGTTGGAAAGAGTTTGCAGAGTATCACTCGCTAGCCTATGGTCACCTGTTAGTTTTCAGATTCAATCTGACATCCCATTTTCATGTTTCCATCTGTAATAAGAGTTGCATGGAAATAGACTACCCTATCAACAAAGCAAATCACAAAAGGACCAGAATTAATAGTGAAGACATTCAACCACCTAAGACACAGAAAACAACTCAAAATAAGAAAAAGTGTAATTCCAATTTCCAGGACACTGCCTTTGATAAAAAAGCAAGAGACCACAAAGGTAGATTGAAGAATCCAAATGAAGGGAAGAGAAACATGGAAGCGGTTGGGAATACTTCCTTTACTGTTATAATGAAATCACACCACTTCACTCTCGGACAAATGTATGTGCCACATGCCCCAATAAAAAGCTGCATCAAAAGTGGTGAACAATTTGTTACGCTTCTGGTTGGAGACAGATCATGGAGGGTTAAATTGAGAAATTATCGAAGTAAATCAGTCAGTTACTTCACTACAAATTGGTCAGCTTTTGCAAGGGAAAACAATTTAAAAAAAGGAGATGCCTGCTTGTTCCAACTCCTACACTGTAGTGACAACATGGTGATGAAGGTTTCTATTTCTAGAAAAATGTCCATCAGCTAA 1860 0.4108 MQKLPTGISLDTISDGYDSGRIGEAKSLRVYLDFFWKVGPKTLDELLEKLARSGYPIDCLICDSFMPWAMEVARSFGIVGVLFLTQNMVVNSIYYHVHLGKLQAPLTENEISLPAQPPLQLGDMPSFFFNYVEDPAFLDFLVDKHTKDEEDYGVEQVRDEECIKWLDDKPKEVVVYVSFGSMAVLEEEQIEELAYGLRESGSYFLWVVRESEETKLPKGFEKKSEKGLVVPWCSQLKVLAHEAVGCFVTHCGWNSTLEALCLGVPMVAMPQEADQSTNAKHIEDVWKVGTKASVDGKHWKTVAANAVGEGGTMAVLYMEAVVVSELWKLGMTSQLDHGDGSIDDSASTPIHFFRIMLPHNLLQGTLRLPTRFVSKYGKHLSNTVHLKLPNGAEWKVNLEKRDGSVWFQQGWKEFAEYHSLAYGHLLVFRFNLTSHFHVSICNKSCMEIDYPINKANHKRTRINSEDIQPPKTQKTTQNKKKCNSNFQDTAFDKKARDHKGRLKNPNEGKRNMEAVGNTSFTVIMKSHHFTLGQMYVPHAPIKSCIKSGEQFVTLLVGDRSWRVKLRNYRSKSVSYFTTNWSAFARENNLKKGDACLFQLLHCSDNMVMKVSISRKMSIS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00039 619 FunFam Glycosyltransferase 151 310 - -
Spst1g00039 619 CDD B3_DNA 520 614 IPR003340 GO:0003677
Spst1g00039 619 Gene3D Glycogen Phosphorylase B; 1 150 - -
Spst1g00039 619 CDD GT1_Gtf-like 5 289 IPR002213 GO:0008194
Spst1g00039 619 Gene3D - 345 445 IPR015300 -
Spst1g00039 619 CDD B3_DNA 351 442 IPR003340 GO:0003677
Spst1g00039 619 Pfam B3 DNA binding domain 520 609 IPR003340 GO:0003677
Spst1g00039 619 Pfam B3 DNA binding domain 353 443 IPR003340 GO:0003677
Spst1g00039 619 ProSiteProfiles B3 DNA-binding domain profile. 351 444 IPR003340 GO:0003677
Spst1g00039 619 PANTHER GLUCOSYL/GLUCURONOSYL TRANSFERASES 42 147 - -
Spst1g00039 619 Pfam UDP-glucoronosyl and UDP-glucosyl transferase 171 289 IPR002213 GO:0008194
Spst1g00039 619 ProSiteProfiles B3 DNA-binding domain profile. 519 616 IPR003340 GO:0003677
Spst1g00039 619 Gene3D - 503 617 IPR015300 -
Spst1g00039 619 Gene3D Glycogen Phosphorylase B; 151 315 - -
Spst1g00039 619 ProSitePatterns UDP-glycosyltransferases signature. 232 275 IPR035595 -
Spst1g00039 619 SUPERFAMILY DNA-binding pseudobarrel domain 347 444 IPR015300 -
Spst1g00039 619 SUPERFAMILY DNA-binding pseudobarrel domain 516 614 IPR015300 -
Spst1g00039 619 SMART B3_2 352 444 IPR003340 GO:0003677
Spst1g00039 619 SMART B3_2 520 613 IPR003340 GO:0003677
Spst1g00039 619 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 5 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00039 Spst-Chr1 554539 559677 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00039 8 295 Glycosyltransferase AT2G43820 41.935 1.71e-75 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Spst1g00039 UDPGT 3.5e-26 CL0113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00039 K13691 - gmx:100781199 501.516