Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00037 AAAGAGAAAAGCAAGTGTTTATGGAATGATGCTAAGATTGGAAAAAGATGTAGTCACTGCGAATCGAGATCCACCCCTCAATGGAGAACTGGTCCTTTGGGACCAAAAACTTTATGCAATGCTTGTGGTGTTAGGTATAAGTCAGGAAGATTGTTTCCAGAATATAGACCTGCAAAAAGTCCTACCTACGATTTGAAGAAGCATTCTAATCTTCATAAAGAGATTTTAAGGAAAAGATAA 240 0.3708 KEKSKCLWNDAKIGKRCSHCESRSTPQWRTGPLGPKTLCNACGVRYKSGRLFPEYRPAKSPTYDLKKHSNLHKEILRKR 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00037 79 SMART GATA_3 11 61 IPR000679 GO:0006355|GO:0043565
Spst1g00037 79 PANTHER GATA TRANSCRIPTION FACTOR 6 77 - -
Spst1g00037 79 ProSitePatterns GATA-type zinc finger domain. 17 42 IPR000679 GO:0006355|GO:0043565
Spst1g00037 79 Gene3D - 11 78 IPR013088 GO:0006355|GO:0008270
Spst1g00037 79 ProSiteProfiles GATA-type zinc finger domain profile. 11 47 IPR000679 GO:0006355|GO:0043565
Spst1g00037 79 CDD ZnF_GATA 16 64 IPR000679 GO:0006355|GO:0043565
Spst1g00037 79 FunFam GATA transcription factor 11 61 - -
Spst1g00037 79 Pfam GATA zinc finger 17 50 IPR000679 GO:0006355|GO:0043565
Spst1g00037 79 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 13 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00037 Spst-Chr1 541384 544149 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00037 14 79 C2C2-Gata Transcription Factor Family AT4G32890 68.182 1.46e-32 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst1g00037 GATA 2.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00037 - - tcc:18611910 120.938