Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00036 ATGAATGTTGGGGCTCCCATTGCTTGCAGAACTCGCAATAAGAAGAGGAAGTTGCTTGAGAATGCTTTAAGAATGAGTGCGGAGAGGAAGAAGGCGCGGGAACGGGAAGCAATGAAACGTGAAGTCGCAAGTGTGAAAATTGGACGTCGGTCTGTCGCTTCGTCCTCAACATCTGCTGCTCTTGCATTGAACTGTGAAAGGGTGTCGGAACATGATTTTGAGCGTTTGGGAGGGTGTGAGGATGACCCTATTGAGATTAGTGATAGTGATGATGGAAGTGATGCTGAAGAGGGGTTGAGGAATTCTGAGAATGATAAATTTTGGGTTGAAGTGGAAAGGAAGAGTGAGGAAGATAAAGGGTGTTTTATGTCAAGTGATAAAGTTGTGAACTTTGGCAATGATGACTGTGGTTGTGTAGGTGAAAACCCGGTTGTATTGATGACTGATAAAGATGGGGATGGTCATGCGCATGTTTTGCTTTTGTCCTCTACGGAGAGTGAGGATGGTGAGACCAGCGATGAAGATTTTCAGGTTGATGATGATTGTGATGATGATGGGTTTGAGACTGAAGACCAGATCAATGACGAGAGTGATGATGATGCTGTGAGGGGGGGTCACAGGAAGATAGTGAAGGGTGCTATGGTGAGAAAGATGCAGAGTGAAATTGAAAACAGTGGAATTTGCAAAAGGAAAAGAGATCGGAAAGATAATGAGCAGGTAGATGAGGTGGAGCAAGCTAATTGTGCTAGCGCGACGTCTAGAAAATCTGAGATTTATAAGCAGGAAGGAAGGCATGCAGCACAGAAACATGAACCAAAGAGAGAGCAAAGAGTCATTGCTGATTTTGAAGGCTTTGGTGTTCACAGGGAATGTTCAGGTCGTTCTACGCCTTCTGAAGCTCCAGAGCATACGAAGAAAAGTGATAGAGATGATCAAAGTGCGACATTGGAGAAACAGATAGGAGTTTCAACCGTGCTCGAGAAGAGTGGGATAATCAATAATATCAATACCATTGATTGGGTGAATATTGATGATATTGAAAGAAAAGAGAATCCACACAGCAAAGGACCTGGTCTGAGGAGTGCTTCTTTACGTCCGAAAAGACAAAAGGAGACAGGAGATTCAGCTAAACTAGTAATGGAAAAGGACAAGGAAAGGGAACAGAAATATTTGTTTGGTAGCAATAACGGTGAGAAGGTAAGGGTGGTGGATTATGAAACTGGTGACGAAGAGCTGCATGAAGTCCTAAAGATGCCATCTACATTGAAGAACAAATGTTATAAAATTTTTACTGAATGCTTTATAGGCAAGAATGATTCTGTTATGGATGATTCAAATGAGTTGGAAGAAAGGGATGATGATGTTGCTGCGAGTCAGACTCAGCCATCAGCTTCTAGGGAGCCCATCCCTTTGAATTGGAACTTTACGAACGAAGAAGAACCCATTGAAAAATCAGAGCAAGAGAAGGAGTTAGATATGTTGTGGGGTGAAATGGATATGTTGCTTCGACTTGAAGAAATTGGGTCTCAGGTTAATAATACAGAGACAAATGAAGCAAGAGAAAACGAAGAAAAACCAGCATCGCAGTGCAAGCATGACACTATTTTTAACGAGCAGATTGGGATATATTGTCGATGGTGTGGTTGGATTGCAACTGAAATCAAATATATCACGCCACCATTTGTAAGCACAGTGGATCGTGAAAGATATGGTGGTGGAGGCGTGTCATATGGTGGAGGGAGCACCTCAAATTTCGATAGGATTCTGCTTAATGAGTCAGGTGATGACTTAGAGGCAATTTGGTCTCACAATGAAGGCACAGTTTGGAACCTTATTCCTGACATAAAACGAAGCTTGTATCCTCACCAACAAGAAGGGTTTGAGTTTATTTGGACAAACTTAGAAGGAACTATTGATCTTGCCAAATTGAAGAGTGTTGACCCATGTAATGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACTGGAAAGACAAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCCAAGTGTCTGCCTGTTATCATTGCTCCTTCCAACATATTGCTTACTTGGGAAGACGAGCTAAGAAAGTGGAACATAGGAATTCCATTCCATAACTTGAACAATCCTGAATTATCAGGAAACGAGTTAGTGATCAATGAGGTTGATTGGTCTGGCACTCAGAGGCAGAATAAGGATGCCATACGGATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTTTTAATCAGCTACAATCTGTACGAGAAACTAGCAGGGGCCACGACTGAAGATTATGGGGAAAAAGACAAAAATAATGGAAAGATGAAAAATAAGAAGCGTGCAAGGACAGGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTTCTTGACGAAGGGCATACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATTCTTCTTTCAGGGACTCCTTTTCAGAACAATTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATACCACAAGAACTCAAGAAGTTTTGCCAAAGTAGATTAATGCACCAAAGGAAAGCTTCGAAAGATATGAGTTGGGAACCTGTTTCTGCTGGAAATCCAGCTGATGAGAAAATAAACCAACTAAAATTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAATCTTCCTGGGTTGAGAGATTGTGTGCTGGTTCTGAAGCCAGACACATTGCAGCAAGAAACTCTAGAGAGCATTGAATGTTCTCAAAACGTGCTAAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCACTTGCCTTTTGTCAAAAAAAGAAGAATCTATTGTTGACAAGAATAAGTTGGAAAAACTTAGATTGAACCCTTATGCAGGGGTGAAAACCAAATTTCTGATCGAGTTTATTAGACTCTGTGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACCTTAATCTTGATCAAAGACCAACTCGAGTCAGCCTTCAATTGGACTGTGGGAATGGAAGTGTTGTATATGTATGGCAAACTTGATCAAAAGCAAAAACAGTCCCTAATTCATAGTTTCAATGATGCAAATAGCCAAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGAGCTTCAAGGGTCGTGCTTCTTGATGTTGTTTGGAATCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTTGGACAAAAGAAGGTTGTTTTCACTTATCATCTTCTTGCACAGGGAACCCCTGAATGTACCAAATATCGTAAACAGGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAAAAATGCTGAAAGTGATAAGCTCAAGAATAGTGGAGTAATGTTTGAGGATAGAGTTCTTGATCTCATGGTTCAGCATGAAAAACTCAAGGATATGTTTGGTGAATGTCTGATTCAGCCAAAGAAGATTTTGGGCCCCTGA 3615 0.4108 MNVGAPIACRTRNKKRKLLENALRMSAERKKAREREAMKREVASVKIGRRSVASSSTSAALALNCERVSEHDFERLGGCEDDPIEISDSDDGSDAEEGLRNSENDKFWVEVERKSEEDKGCFMSSDKVVNFGNDDCGCVGENPVVLMTDKDGDGHAHVLLLSSTESEDGETSDEDFQVDDDCDDDGFETEDQINDESDDDAVRGGHRKIVKGAMVRKMQSEIENSGICKRKRDRKDNEQVDEVEQANCASATSRKSEIYKQEGRHAAQKHEPKREQRVIADFEGFGVHRECSGRSTPSEAPEHTKKSDRDDQSATLEKQIGVSTVLEKSGIINNINTIDWVNIDDIERKENPHSKGPGLRSASLRPKRQKETGDSAKLVMEKDKEREQKYLFGSNNGEKVRVVDYETGDEELHEVLKMPSTLKNKCYKIFTECFIGKNDSVMDDSNELEERDDDVAASQTQPSASREPIPLNWNFTNEEEPIEKSEQEKELDMLWGEMDMLLRLEEIGSQVNNTETNEARENEEKPASQCKHDTIFNEQIGIYCRWCGWIATEIKYITPPFVSTVDRERYGGGGVSYGGGSTSNFDRILLNESGDDLEAIWSHNEGTVWNLIPDIKRSLYPHQQEGFEFIWTNLEGTIDLAKLKSVDPCNEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPSNILLTWEDELRKWNIGIPFHNLNNPELSGNELVINEVDWSGTQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATTEDYGEKDKNNGKMKNKKRARTGEYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLMHQRKASKDMSWEPVSAGNPADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPDTLQQETLESIECSQNVLNFEHKLALVSVHPSLFLTCLLSKKEESIVDKNKLEKLRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLILIKDQLESAFNWTVGMEVLYMYGKLDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYRKQAEKNRLSELVFSNKNAESDKLKNSGVMFEDRVLDLMVQHEKLKDMFGECLIQPKKILGP 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00036 1204 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 800 862 IPR014001 -
Spst1g00036 1204 Gene3D - 595 908 IPR038718 -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 161 204 - -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 444 471 - -
Spst1g00036 1204 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 28 1200 IPR044567 GO:0080188
Spst1g00036 1204 MobiDBLite consensus disorder prediction 221 316 - -
Spst1g00036 1204 Pfam Helicase conserved C-terminal domain 1006 1121 IPR001650 -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 349 376 - -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 257 288 - -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 167 197 - -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 295 315 - -
Spst1g00036 1204 Pfam SNF2-related domain 632 949 IPR000330 GO:0005524|GO:0140658
Spst1g00036 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 609 885 IPR027417 -
Spst1g00036 1204 SMART ultradead3 615 870 IPR014001 -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 76 106 - -
Spst1g00036 1204 CDD SF2_C_SNF 978 1132 - -
Spst1g00036 1204 Coils Coil 15 35 - -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 457 471 - -
Spst1g00036 1204 Gene3D - 928 1194 IPR027417 -
Spst1g00036 1204 SMART helicmild6 1036 1121 IPR001650 -
Spst1g00036 1204 MobiDBLite consensus disorder prediction 223 242 - -
Spst1g00036 1204 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 807 1169 IPR027417 -
Spst1g00036 1204 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1009 1167 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00036 Spst-Chr1 530825 535131 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00036 1019 1173 RAD5 or RAD16-like Gene Family AT5G43530 36.774 2.10e-20 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst1g00036 SNF2_N 2.5e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00036 K10875 - gmx:100812737 1482.62