Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00035 ATGCAGGTGGATCCTGAGAGATGTGGCAGAAGGTTGTCATCTGGTGGAGGGAACACCTCGCGATTTGATGGGGCTCTGTTCACTGAATCTGGCGATCACTCAGAGGCAATTAGGTCTCATAATCATGGCACAGTTTGGGACCTTACTCCTGGCACAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATCTGGGCAAATTTGGCAGGAACCACTGACCTTGCCAAGTTGAAGAGGGTTGATCCTCAGAGCGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACCAGGTTGACCATGGTGTTTCTGCAGACATATTTGCAAGTGTTTCCCAAGTGTTTACCCATTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAGGAAGTGGAACATAGGGATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAAGAACATGCCATTAGGGAAGTTGATTGGTTATTCAACCAACAGCAGAAGAAGGATGTCATAAGAATGGTTAAATTGTGTTCTTGGTACAAAGAGAAGAGTATTCTGTTAATCAGCTACAATCTATATGAGAAGCTAGCCGGGGGAAAATCTGAAGGAGATGGAGAGAAAGAGAAGAAAAATAGTAAGATTGGAAAAGAGAAGAAACGTGCAAGGTCTAGGGAGTATGTTGAAACTGCATTGGGAAATGTTCTGCGAGAATATCCTGGTTTATTAGTTCTTGATGAAGGTCACACACCAAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCGGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACACCTTTCCAGAACAATTTTCTTGAACTCTATAATATTTTGTGCTTAATGAAACCATCTTTTCCTGACAGCATACCGCAAGAACTTAAGAAGTTTTTGAAAAATAAATTAATACAGGAAACGAAAGCTTCAAAAGATGATAACTGGGAACCCGTTTCTGCTGGAAATCAAGCTGATGAAAAAATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGTTTAAGAGATTGTGTACTGGTTTTGAAGCCAGAATGCTTACAGCAAAAAATTCTGGAGAGCATTGACTGTTCTCAAAATGCACTAAATTTTGAGCACAAGTTGGCCTTGGTCTCTGTCCATCCCTCCCTTTTCATCAACTGCGCTCTGTCAAAGAAAGAAGAATCTGATGTTGACTCAGAGCTGTTGAAAAAGATTAGATTAGACCCTTATGAAGGGGTTAAAACCAAATTTCTGATCGAGTTTGTCAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTATGCTTAATCAAGGACCAGCTGGAGTCAGCCTTCAATTGGACTGTGGGAACGGAAGTGTTGTATATGCATGGCAAGCTTGATCAAAAGCAAAAGCAGGTTCTCATTCATAGTTTCAATGATGCAAATAGTCAGGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATCAATTTGGTTGGAGCTTCAAGGGTCGTGCTTGTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGTCGAGCGTATAGACTTGGACAGAAGAGGGTTGTTTATACTTACCATCTTCTTGCACAGGGCACTCCCGAATGTGCAAAATATGGTAAACAATCAGAGAAGGACCGATTATCTGAATTGGTTTTCTCAAGTAGAAATGCTGAAAATGATAAGCTTGAGAATGTTGGAGTAAAGTTTGAGGATAAAGTTCTTGATCTCATGGTTCAGCATAAAAATCTCAAGGACATATTTGGTGAATGTCTGGTTCAGCCAAAGGACAGAGATTTGGAAACTTTGGGCCCCTAA 1941 0.4147 MQVDPERCGRRLSSGGGNTSRFDGALFTESGDHSEAIRSHNHGTVWDLTPGTKESLFPHQQEGFEFIWANLAGTTDLAKLKRVDPQSEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPIIIAPANILLTWEDELRKWNIGIPFHNLNNAELSGKEHAIREVDWLFNQQQKKDVIRMVKLCSWYKEKSILLISYNLYEKLAGGKSEGDGEKEKKNSKIGKEKKRARSREYVETALGNVLREYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFLKNKLIQETKASKDDNWEPVSAGNQADEKINQLKLLMNPFVHVHKGSILQKNLPGLRDCVLVLKPECLQQKILESIDCSQNALNFEHKLALVSVHPSLFINCALSKKEESDVDSELLKKIRLDPYEGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFNWTVGTEVLYMHGKLDQKQKQVLIHSFNDANSQAKVLLASIKASSEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYGKQSEKDRLSELVFSSRNAENDKLENVGVKFEDKVLDLMVQHKNLKDIFGECLVQPKDRDLETLGP 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00035 646 Pfam SNF2-related domain 69 387 IPR000330 GO:0005524|GO:0140658
Spst1g00035 646 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 82 300 IPR014001 -
Spst1g00035 646 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 615 IPR001650 -
Spst1g00035 646 SMART ultradead3 52 308 IPR014001 -
Spst1g00035 646 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 19 640 IPR044567 GO:0080188
Spst1g00035 646 SMART helicmild6 474 559 IPR001650 -
Spst1g00035 646 Gene3D - 29 353 IPR038718 -
Spst1g00035 646 Gene3D - 366 633 IPR027417 -
Spst1g00035 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 603 IPR027417 -
Spst1g00035 646 MobiDBLite consensus disorder prediction 1 23 - -
Spst1g00035 646 CDD SF2_C_SNF 416 570 - -
Spst1g00035 646 Pfam Helicase conserved C-terminal domain 451 559 IPR001650 -
Spst1g00035 646 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 47 321 IPR027417 -
Spst1g00035 646 MobiDBLite consensus disorder prediction 205 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00035 Spst-Chr1 505189 507129 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00035 457 611 RAD5 or RAD16-like Gene Family AT5G43530 36.129 5.76e-19 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst1g00035 SNF2_N 5.9e-22 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00035 K10875 - gmx:100812737 1052.35