Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00030 ATGCAGCTGAATCGCCTCTGCATCGTTTTACCACCAAAATCTGGTGAAATGGTAGTGCCAATTGAAAAGGGTGTCCAAGAAGAACCCTTTCAAACACCAAAGAAACAAGTTGAGGCCAAACAGCCTCACAGGGCATGTGGGGGGCAAGTTCTTGCTTTGCTTCGTGATTCTTTGGGCAAGTTGTATGACTCAGGGTGGTGGAGAATTTGCCAAAAGGGAGAGCACAAAGAGAAGCACAGCTCTGGTGTGTTGTTTCATGACATGGATGGTGTGCAAGTTTCGGTCAACATTGGCAGGGACAACCCAAGAATTTTCAGCTACGCAGAGCTGTTCATAGGGTCCAATGGTTTCAGTGAAGACCAAGTACTAGGGAGTGGAGGGTTTGGCAAAGTGTACAGGGCCGTTTTGCCTAGTGATGGAACTGTGGTTGCTGTGAAGTGCTGTTTGGCAGGGAAAGGAAAGCAGTTTGAGAAGAGTTTTGCAGCAGAGTTAGCAGCTGTGGCTGATCTTCGCCACAAAAATCTTGTGAGGCTGAGGGGCTGGTGTGTCAATGAAGATCAGTTGCATCTTGTTTATGACTACATGCCAAACCGAAGCCTCGATCGTGTACTATTTCGCAGGCATGAGCACTTGAAGCCTAAGCCTCTTGAATGGGGACAAAGAGGGAAGATTGTGAAAGGTTTGGCAGCTGCATTGTACTATCTCCATGAGCAACTAGAGACTCAAATCATTCACAGGGATGTTAAGACAAGCAATGTGATGCTTGATTCCCATTACAATGCTCGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAGCATGAGCTTGAGTATGAGTATAAGTATAACAATAGGAAAACAATATCAATCAGAAGTGGTAATTTCAGATTGGGAGAGACATCAAGAATTGGGGGCACAATTGGGTATCTTCCACCTGAAAGCTTGCAGAAACCAAGTCATGCTACATCCAAATCTGATGTCTTCAGTTTTGGGATTGTTGTGCTAGAGGTGGCGTCTGGAAGGAGAGCAATTGATCTCACGCACCCAGATGAACAAATCATTTTGCTTGACTGGATTAGAAGGCTTTGTGATGAAGGGAAGCTTCTGGAAGCAGCTGATACAAGGTTACCAGATGGATCCTACAAGCTTTCAGAGATGCAGCATTTCATTCACATAGGCCTCCTCTGCACACTCCATGATCCACAATTGAGGCCAAGCATGAAATGGGTTGTGGAAGCTCTTTCTGACATTTCTATTAAGCTACCATCACTACCTTCTTTTCTTTCCCACCCTTTATACATCTCTTTGTCTTCCCCATCTGATACTAGTCATAGTCCTAGCAGCACAAGTGGCACTACGTCTACCACAGGAAATGCTAGCATAAACACCAACTATACCTCATCAAACTACGTCACAGCTGCAGGTGAAACTGTGTACGTAACTGCTGAGTATAAAAACAGTGGAATAATCTCTTCTAAGAGCATGTACCGCCAGCAACCATTTCCTGTGGTTGAAACTCCGAGAGAAATTTCATACAAGGAGATTGTTTCTGCTACACATAACTTCTCAGATTCAAGAAGGGTGGCGGAGCTAGACTTTGGAACTGCTTACCATGGCATCCTTGATGACAAATGCCATGTTTTGGTGAAACGCCTTGGGATGAAGACATGTCCTGCATTGCGTGATAGATTCTCCACTGAACTCCGGAATTTGGGACGGCTTCGCCATAGAAATTTGGTTCAACTTCGGGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTATTTATGATTACTCAGCAAGTAGAATTCTCAGCCAGCTGCTTATGCATCATAACAATGAACACAGAAGTCGGGCTTCTGTCCTCCAATGGCATCACAGGTACAGCATAGTGAAAGCACTGGCCTCTGCAGTACTCTATCTACATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACCTCTTCAGCTGTCATTCTTGAACAAGATATGAATCCAAGACTCAGCTCTTTTGCTCTTGCAGAATTTTTGTCAAGGAATGAGCATGGTCATCATGTAGTTGCTGACACTAGAAAATCTGTTCGTGGGATTTTCGGCTACATGTCACCAGAATACGTGGAATCAGGTGAAGCAACCACTGAAGCTGATGTTTATAGTTTTGGTGTGGTGGTGCTTGAAATTGTCAGTGGACAGATGGCAGTAGATTTCAGGCAACCAGAGGTGCTTTTGGTGAAGAAGGTTCACGAATTTGAGATGAGAAAACGACCATTGAAGGAACTAGCTGACATTAGACTCAATGGAGAATACAATGACCAAGAATTGATGAGATTATTAAGGTTAGGAATTGCTTGCACCCGTTGTAACCCGCAGTTAAGACCAAGCATGAGACAAATAGTAAGCATCCTTGATGGCAACGACAAATTACTTGTCCAGAATAACAAGGAGAGCAGGGAAGAATGGAGAGAAAGAAATTATTCTTCTTTGTCAATGATTAAGAGAATCCAAGCTCTTGGAATACAGTAA 2526 0.4418 MQLNRLCIVLPPKSGEMVVPIEKGVQEEPFQTPKKQVEAKQPHRACGGQVLALLRDSLGKLYDSGWWRICQKGEHKEKHSSGVLFHDMDGVQVSVNIGRDNPRIFSYAELFIGSNGFSEDQVLGSGGFGKVYRAVLPSDGTVVAVKCCLAGKGKQFEKSFAAELAAVADLRHKNLVRLRGWCVNEDQLHLVYDYMPNRSLDRVLFRRHEHLKPKPLEWGQRGKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYKYNNRKTISIRSGNFRLGETSRIGGTIGYLPPESLQKPSHATSKSDVFSFGIVVLEVASGRRAIDLTHPDEQIILLDWIRRLCDEGKLLEAADTRLPDGSYKLSEMQHFIHIGLLCTLHDPQLRPSMKWVVEALSDISIKLPSLPSFLSHPLYISLSSPSDTSHSPSSTSGTTSTTGNASINTNYTSSNYVTAAGETVYVTAEYKNSGIISSKSMYRQQPFPVVETPREISYKEIVSATHNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGMKTCPALRDRFSTELRNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSASRILSQLLMHHNNEHRSRASVLQWHHRYSIVKALASAVLYLHEEWDEQVIHRNITSSAVILEQDMNPRLSSFALAEFLSRNEHGHHVVADTRKSVRGIFGYMSPEYVESGEATTEADVYSFGVVVLEIVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLLRLGIACTRCNPQLRPSMRQIVSILDGNDKLLVQNNKESREEWRERNYSSLSMIKRIQALGIQ 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00030 841 ProSitePatterns Serine/Threonine protein kinases active-site signature. 243 255 IPR008271 GO:0004672|GO:0006468
Spst1g00030 841 FunFam Receptor like protein kinase S.2 91 194 - -
Spst1g00030 841 Gene3D Phosphorylase Kinase; domain 1 484 598 - -
Spst1g00030 841 SMART serkin_6 117 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00030 841 MobiDBLite consensus disorder prediction 439 461 - -
Spst1g00030 841 ProSitePatterns Protein kinases ATP-binding region signature. 123 152 IPR017441 GO:0005524
Spst1g00030 841 FunFam Receptor like protein kinase S.2 600 826 - -
Spst1g00030 841 FunFam Receptor like protein kinase S.2 195 420 - -
Spst1g00030 841 Gene3D Transferase(Phosphotransferase) domain 1 195 420 - -
Spst1g00030 841 ProSiteProfiles Protein kinase domain profile. 117 433 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00030 841 Gene3D Transferase(Phosphotransferase) domain 1 603 829 - -
Spst1g00030 841 Gene3D Phosphorylase Kinase; domain 1 89 194 - -
Spst1g00030 841 SUPERFAMILY Protein kinase-like (PK-like) 101 451 IPR011009 -
Spst1g00030 841 SUPERFAMILY Protein kinase-like (PK-like) 499 803 IPR011009 -
Spst1g00030 841 ProSiteProfiles Protein kinase domain profile. 522 810 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst1g00030 841 Pfam Protein tyrosine and serine/threonine kinase 528 803 IPR001245 GO:0004672|GO:0006468
Spst1g00030 841 PANTHER - 79 416 - -
Spst1g00030 841 CDD STKc_IRAK 533 805 - -
Spst1g00030 841 Pfam Protein kinase domain 118 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00030 Spst-Chr1 444814 447339 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00030 508 804 Receptor kinase-like Gene Family AT5G55830 36.213 6.09e-53 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Spst1g00030 Pkinase 1.6e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00030 - - vun:114184452 1507.66