Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00026 ATGTCCTTCAATCAATCAAAGTCCGATAAGAGCGACGCTGTGTACCGAAAATCCGGGCGATCCGCCAGCTTCAATCAGCAGCGAGGCTCCTCCGGCGGTGCGTACGGCAAGGGCGGAGGCGGCGGTGGCGGCGCCGGGCCTTCTCCGTCCCTCTCTTCTAACCGGAGTTTTAACAAGAAGTCTAATAACAATGCACAAGGTGGGCAATCCAGGGTAAACCCTACACTGGTGAATTCGTCTGAATCTAATAGTACTTATGCAGCCCGGACTGTACCAAATGGTTCCCATATACAGCCACAGATTCATGGAGGATCTGATTTGCCAGTTACAAATGCAACTGCCAAGCCATCGGAACTGTCAGCTGCACAAAGGAGCACCAGGGCTGTTCCAAAAGCTCCTACATCTCAGTCTCCCGCCATGAGTTCCGATCCTGCTGCTCCTACAACCCCTGCCAAGGATGCATCTAAGGCATTCCCTTTCCAATTTGGATCTATCAGTCCTGGCTTTATGAATGGGATGGCTATTCCTGCTCGAACAAGCTCAGCTCCTCCTAATATAGATGAGCAGAAGCGTGATCAGGCTCGACATGATTCTTTTAGACCTGCACCCTCAGGCCCAACACCCCCTGTTCCGAAGCAGCAGACAGTGAAGAAAGATACAGTTGTTGCTGACCAATCTAATACTGGGGAGACTCATCCTGGGACAAGGGCAAAAAAGGATACTCAACTGTCACCATTACCCCCAGCAAGCCAGATGCAGAAGCCTTCTGTCATTCCTTTAACTGGAATTTCAATGCCAATGCCATATCATCAGGCACAGGCATCTGTACACTTTGGTGGTCCTAATCCACAGATCCAATCTCAAGGTATGTCATCAGCACCTCTTCAGATGCCATTGCCAATGCCTTTACCAATTGGAAGTGCTGCACAAGTGCAACAACAGGTTTTTGTTCCAAACCTTCAACCTCATCCCATCCATCCCCAGGGAATCATGCATCAAGGGCAAAGCATGGGTTTTACTCCTCAAATTGGTCCACAGTTGTCTCATCAGTTAGGCAACATGGGTGTTGGAATTAGCCCACAATATCCACCACAGCAAGGAGGAAAGTTTGCTGGTCCTCGGAAAACTACTCCCGTCAAGATAACACATCCTGAGACACATGAAGAACTAAGACTTGATAAAAGATCTGATGCATATTCAGATGGTGGGTCATCTGGTGCGAGGCCTCATTCTTGTATGGCTTCTCAATCTCAGCCTGCCCAACAATTTGGTGCTTCTCATCCTATTAATTACTACCCATCCGGTTCCTACAGTACCAATTCTCTCTTTTATCCAACTGCAAGTTCTCTTCCATTAACAAGTAGCCAGATAACTCCTAACTCTCAGCCTCCCAGATTTAATTATGGAGTGAACCATGGTCCACAAAATGTTAGTTTTGTAAATTCATCTTCTCATAGTTCCCTGCCTGTTAATAAATCTGGTGCTCCTATTCCTGGAAATGCTGAACTGCCAAATGCAGAATTTTCTCGTGATGTGCATAATACAATCTTATCTGCTCCATCAGGAGTAACTTCTGTGTCAATTAAGCCAAGTGGTGGATCTGGTGTTGCAGATTCATTTGCCAATTCTAGCACTCAAAGAAGTGCATCTCCTAGTTCTTCATTAAAATCTGGTGATGCTTTTTCTTCTGCACCACTAAAAGGGTCTGAAACAGCTGAAATATGTTCCCAACAGTCTAAGTTGTCCACTGATTCATCAGTTTTGAGCTCATTTCCAAATCCATCTGCTGTGAAGCCTGCATCAGCTTCCTTATCGTTTTCTACATCTGCTGTTAGTGAAGATTCTATTTCAGTTGCACCTACTAATGATGGCAGAAGTAAGGAATCTCTGAGTAGGTCAAATTCTTTGAAGGATAATCAGAAGAAAATACAGAAGAAAGGCCAATCACAGCATCAGGTACATAAGTTAATATTAATTAAAGTTGCTGTGCAATCTCCTTCTGTTGATAGTGGTATCCCTGATAATGTTTCTGAAACTGTTGTAATTAAAACAAACCATTCTGCAGTGATTACCAGTGAAAATCTGTCAACTGCTGCTTCAGCTTCAGACTTGTTATCAGCTACTAGTGAGAGCATACCTTATGCTGTTGAAATGAAAACTAATGAGTCTACACAAGTTTCAGTTCATGCTTCAGCTCAAGGACATTTTGCAGGGGTGGATGATTTTAACAATGGTAAGAATGCTGAGGTAGATGAGTTGTCACAACAGGATAAACTATTGCAGCCAAATATTATGGAAATGGGTGGTAAAGCAGAAAACTTGTCTGTTGAAGGGTCTAAACAAAATGATAGTGACGGTGGACCAGAATTAAATCAAACTAAGGACGGTGCTGTTAAGCTAGGCACTGAGGTTGAATCTACAAGTTGCAATGTGCAGCCAGAGCAGGATGAATCTACAAGTTGTAGGGCAGGATGTGATGCGACTACTGATAATACTGCTTTGGACTCAAAAGATGTTTTCCTGAACAGAAATGACAGTGTAATTAGCAATGAAGCTGTTTTGACAATTTCTGGCACATCAGATCAGCAGTCTGCTGATCTCTCAGAAACATCTTCAAAACAGTTGAAGGATGGTTCAGAGAGTACTAGCAGTGGTTCAGTGTCTCTTCCAACGTCAGGTACCAAGGAAAAACCAGTTTCAGAGCCTAGTAAGGTGAAACCTGCAGCAAAGGGTAAACAGAAAAGAAAACAGTTTCTTCTGAAGGCTGATGCTACTGGACCAACATCTGATCTTTATAATGCATACAAGGGACCTGAGGAAAAGAAAGAATCTGTGTTAAGTTCAGAGAAACCAGAAAGTGACTCTACTTCTGGAAATTTGGAGCAGTCGCCTACTGAACCTGTGCAGTCAGATACTGTATCAAACAAGCAATCTAAGCAGAGTAAAGCTGAACTTGAGGATTGGGAGGATGCTGCTGACATGTCTACACCAAAATTAGAAGTGTCAGATGAAACTGAACAGGTTAGTGATGGAAGCGCAGTTACTGCCAAGAAGTACTCAAGAGATTTCCTTATGAAATTTGCAGAGCAATGTGCTGATCTTCCTGAAGGGTTTGAAATTACAGCAGACGTTGCTGAGATTTTGATGAATTCTAATGTTAGTTCTCATGCAACTGAACGTGATTCACCTTCTACTGGAAGAAGTATTGATAGGTCAGGTGGGATTTCTCGTCGTGGGAGTGGTATTGTTGAGGAAGACAAATGGAATAAAGTTTCCAATGCATTTCATTCTGGGATGCGTTTGGATAATGTTGGAGGTAATGCAGGATTTCGTTCTGGCCAAGGAGGCAATTTTGGTGTTTTAAGAAATCCACGCACACAGGCACCTATGCAATATGCTGGAGGAATTCTTTCTGGTCCAATGCAATCCATGGTAAATCAGGGAGGAATGCAAAGAAATAGCCCTGATGGAGAGAGGTGGCAGCGCGCTACAAGCTTCCAGCAGAGGGGTTTAATCCCGTCTCCTTCTCCCCAAACTCCTTTACAGACTATGCACAAAGCTGAGAAGAAGTATGAGGTGGGTAAAGTGACTGATGAGGAAGAGGCGAAGCAAAGGCAATTGAAGGGTATATTAAACAAGTTAACACCTCAGAATTTTGAGAAACTTTTTGACCAGGTTCGAGCAGTTAATATTGACAATGAAATCACTCTGAATGGTGTCATCTCACAAATCTTTGAGAAGGCATTGATGGAGCCGACCTTCTGTGAAATGTATGCCAATTTCTGTTTTCATCTGGCTGCTGCATTACCTGATCTCAGTCAAGACAATGAAAAGATAACTTTTAAGAGATTATTGTTAAACAAGTGCCAGGAAGAATTTGAAAGGGGTGAACAAGAGCAAGAGGAAGCTAATAAAGCTGATGAAGGTGAGGTTAAGCTGTCTAATGAGGAAAGAGAAGAGAAGCGAACCAAGGCAAGAAGACGAATGTTGGGTAATATCAGATTGATTGGAGAATTATATAAGAAGAAAATGTTGACAGAGAGGATAATGCATGCATGCATCAAGAAGTTATTGGGTCAGTATCAGGATCCAGATGAAGAAGATATTGAAGCTTTGTGCAAGCTGATGAGTACTATTGGGGAGATGATTGACCATCCTAAAGCCAAAGAACATATGGATGCATATTTTGAAATAATGAGATCATTATCAAACAACATGAATTTTTCTTCTAGGGTGAGGTTCATGCTGAAGGATGTAATTGATTTGAGAAAGAATAAATGGCAACAAAGAAGAAAAGTTGAAGGTCCGAAGAAGATTGAGGAAGTGCACAGAGATGCTTCTCAAGAGAGGCTGGCCCAAACTAGTAGGTTGGGTCGTGGTCCAGGCAACAATCCACCTAGAAGGATGCCTATGGATTTTGGTGCAAGAGGGTCATCTATGTTATCTCCTAATGCTCAGGGACTGCGGGGATTGCCTACTCAACCTCGTGGGTATGGATCCCAAGATGCCCGGATTGATGAAAGGCAAACTTATGAGGCTAGGACATTGTCAGTTCCCTTACCGCAAAGACCTTTAGGTGATGAATCAATAACCTTGGGACCAATGGGTGGTCTTGCCAGAGGAATGTCCATTAGAGGTCCACCTGCAGTTTCAAGTTCCGGTCTTAATGGTTATAATAATTTGTCAGAGCGCACTTCATACAGCTCTAGGGAGGATCCTGCATCAAGATATGCTCCAGATAGATTTTCTGGTTCTACTGCTTATGATCAATCTAGTGCTCAAGATCATAATGTGAATTATGTTAACAGGGACATAAGAAATGCAAATAGGATTCTTGATAAACCAACTGTAACTTCACCACCTGCCAGAACGCAAGGAACAGCAGTCTCCCAGAATATTTCCCAAGATCGATTGCAGGAAATGTCCATGTTAGCAATCAGAGAATACTACAGTGCAAGAGATGTGAGTGAAGTTGTTCTATGTATCAAAGATCTGAACTCTCCGAGCTTTCATGCTTCCATGGTTTCTCTCTGGGTCACAGACTCCTTTGAAAGAAAGGACACCGAGAGGGATCTTTTGTCCCAGCTGCTTGTCAAGCTTGTGAAATCTAAGGATGGACCCTTGGGTCAAGCCCAGCTCATCAAAGGGTTTGAATCTGTTCTCAGTACTTTGGAAGATGCGGTTAATGATGCCCCTAAAGCACCAGAGTTTCTTGGCCGTGTGTTTGCCAAAGCTATAACAGAGCATGTAGTCTCTTTGAAAGAGATTGGGCAGTTAATACATGAGGGTGGAGAGGAACCGGGGAGCCTACTAGAAGTTGGGCTTGCAGCTGATGTTCTTGGAAGCACCTTGGAGGTGATAAAAATGGAGAAGGGTGATGCTGGTTTGAGTGAGATATGTGCGAACTCCAATTTGCGGTTGGAGACCTTCCGGCCGCCGGAACCTCTTACATCAAGGAAGTTAGAGAAATTTATTTAG 5478 0.4334 MSFNQSKSDKSDAVYRKSGRSASFNQQRGSSGGAYGKGGGGGGGAGPSPSLSSNRSFNKKSNNNAQGGQSRVNPTLVNSSESNSTYAARTVPNGSHIQPQIHGGSDLPVTNATAKPSELSAAQRSTRAVPKAPTSQSPAMSSDPAAPTTPAKDASKAFPFQFGSISPGFMNGMAIPARTSSAPPNIDEQKRDQARHDSFRPAPSGPTPPVPKQQTVKKDTVVADQSNTGETHPGTRAKKDTQLSPLPPASQMQKPSVIPLTGISMPMPYHQAQASVHFGGPNPQIQSQGMSSAPLQMPLPMPLPIGSAAQVQQQVFVPNLQPHPIHPQGIMHQGQSMGFTPQIGPQLSHQLGNMGVGISPQYPPQQGGKFAGPRKTTPVKITHPETHEELRLDKRSDAYSDGGSSGARPHSCMASQSQPAQQFGASHPINYYPSGSYSTNSLFYPTASSLPLTSSQITPNSQPPRFNYGVNHGPQNVSFVNSSSHSSLPVNKSGAPIPGNAELPNAEFSRDVHNTILSAPSGVTSVSIKPSGGSGVADSFANSSTQRSASPSSSLKSGDAFSSAPLKGSETAEICSQQSKLSTDSSVLSSFPNPSAVKPASASLSFSTSAVSEDSISVAPTNDGRSKESLSRSNSLKDNQKKIQKKGQSQHQVHKLILIKVAVQSPSVDSGIPDNVSETVVIKTNHSAVITSENLSTAASASDLLSATSESIPYAVEMKTNESTQVSVHASAQGHFAGVDDFNNGKNAEVDELSQQDKLLQPNIMEMGGKAENLSVEGSKQNDSDGGPELNQTKDGAVKLGTEVESTSCNVQPEQDESTSCRAGCDATTDNTALDSKDVFLNRNDSVISNEAVLTISGTSDQQSADLSETSSKQLKDGSESTSSGSVSLPTSGTKEKPVSEPSKVKPAAKGKQKRKQFLLKADATGPTSDLYNAYKGPEEKKESVLSSEKPESDSTSGNLEQSPTEPVQSDTVSNKQSKQSKAELEDWEDAADMSTPKLEVSDETEQVSDGSAVTAKKYSRDFLMKFAEQCADLPEGFEITADVAEILMNSNVSSHATERDSPSTGRSIDRSGGISRRGSGIVEEDKWNKVSNAFHSGMRLDNVGGNAGFRSGQGGNFGVLRNPRTQAPMQYAGGILSGPMQSMVNQGGMQRNSPDGERWQRATSFQQRGLIPSPSPQTPLQTMHKAEKKYEVGKVTDEEEAKQRQLKGILNKLTPQNFEKLFDQVRAVNIDNEITLNGVISQIFEKALMEPTFCEMYANFCFHLAAALPDLSQDNEKITFKRLLLNKCQEEFERGEQEQEEANKADEGEVKLSNEEREEKRTKARRRMLGNIRLIGELYKKKMLTERIMHACIKKLLGQYQDPDEEDIEALCKLMSTIGEMIDHPKAKEHMDAYFEIMRSLSNNMNFSSRVRFMLKDVIDLRKNKWQQRRKVEGPKKIEEVHRDASQERLAQTSRLGRGPGNNPPRRMPMDFGARGSSMLSPNAQGLRGLPTQPRGYGSQDARIDERQTYEARTLSVPLPQRPLGDESITLGPMGGLARGMSIRGPPAVSSSGLNGYNNLSERTSYSSREDPASRYAPDRFSGSTAYDQSSAQDHNVNYVNRDIRNANRILDKPTVTSPPARTQGTAVSQNISQDRLQEMSMLAIREYYSARDVSEVVLCIKDLNSPSFHASMVSLWVTDSFERKDTERDLLSQLLVKLVKSKDGPLGQAQLIKGFESVLSTLEDAVNDAPKAPEFLGRVFAKAITEHVVSLKEIGQLIHEGGEEPGSLLEVGLAADVLGSTLEVIKMEKGDAGLSEICANSNLRLETFRPPEPLTSRKLEKFI 1825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00026 1825 SMART if4_15 1204 1426 IPR003890 GO:0003723|GO:0005515
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1614 1633 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 385 427 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 980 1005 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1054 1081 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 480 505 - -
Spst1g00026 1825 Gene3D - 1204 1439 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1054 1071 - -
Spst1g00026 1825 SMART ma3_7 1638 1752 IPR003891 -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 775 794 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 775 789 - -
Spst1g00026 1825 SUPERFAMILY ARM repeat 1198 1428 IPR016024 -
Spst1g00026 1825 ProSiteProfiles MI domain profile. 1637 1761 IPR003891 -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1296 1324 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 409 427 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 935 949 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 858 1009 - -
Spst1g00026 1825 FunFam Eukaryotic translation initiation factor 4G 1631 1824 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1 254 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 614 629 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 630 645 - -
Spst1g00026 1825 SUPERFAMILY ARM repeat 1632 1822 IPR016024 -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1431 1505 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 522 564 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 614 649 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 522 560 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 18 32 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1549 1572 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 950 979 - -
Spst1g00026 1825 Pfam MA3 domain 1643 1750 IPR003891 -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1543 1596 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 1431 1450 - -
Spst1g00026 1825 Gene3D - 1629 1825 - -
Spst1g00026 1825 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 354 1825 IPR045208 GO:0003743
Spst1g00026 1825 Coils Coil 1286 1306 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 211 232 - -
Spst1g00026 1825 Pfam MIF4G domain 1204 1426 IPR003890 GO:0003723|GO:0005515
Spst1g00026 1825 FunFam Eukaryotic translation initiation factor 4G 1204 1439 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 47 144 - -
Spst1g00026 1825 MobiDBLite consensus disorder prediction 858 898 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00026 Spst-Chr1 407875 416720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00026 1 790 Eukaryotic Initiation Factors Gene Family AT3G60240 35.723 8.22e-93 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00026 K03260 - gmx:100796636 2862.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00026 1 407875 416720 Spst1g00026 1 407875 416720 ECH
Spst4g01219 4 46556829 46565309 Spst1g00026 1 407875 416720 PCT