Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01438 ATGGAAGGTCTCTTTAACTGTAATAACTGTAAGGGAAAAGACAATAATAAACGGGTTGGGTCGGGTCGGGGTGGCAGTCGGTTTTTGCAGGGAGCAGACACGGATCCGGATGACGTGGCAAAGATAAGGGAAGCTTTACAAACTGGGTCGACCTACTGTGGAAGGTTACTGAATTACAAGAAGGACGGTACTCCCTTTTGGAACCTTCTTACTATTGCCCCTATCAAGGACGATGATGGCAGAGTCCTTAAATTTATAGGAATGCAAGTGGAGGTTAGCAAGCACACAGAGGGGACAAAGGAGAAGATGCTACGTCCCAATGGATTACCCGAATCCTTGATTCGATACGATGCTCGTGAGAAGGAGAAGGCAAACAGTACAGTATCTGAGTTGTTGCAGGCTGTGAGGAGGCCACGGGCACTGAGTGAATCAGCAGGCCGTCCCGTGATCAGAAAGTCAGCATCAGGTGATGATGCTCAAGCTAAACCAGAGAAGCCATCCAGAAGAAAATCTGAGAGTGTCTCTTCTTTTAGACGCAAATCACATGCAGGAGACGCAACTTCAATGGAAAAAATCACTGAGCTACCTGAAAAGAAACACAAGACATCTCGTCGACGTTCCTTCATGGGGTTCATCAGGAAAAGTCAGTCAAATTTTGGAAGCTTCAATGATAAAGCAGTCATTGAGGACAGCTCTGAGAGTAGTGATGAGGATGATGAGAGGTGTGGTAGTTTTGATGGCAAAGTACAGAGGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTCGAACGTATTGAGAAGAACTTTGTCATCACTGATCCCAGGCTGCCTGATAATCCCATTATCTTTGCATCCGATAGCTTCTTGGAGCTTACGGAGTATAGTCGTGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGGCCTGAAACTGATCCAGCAACAGTGAGAAAAATTCGAGAGGCTATTGACAATCAAACTGACGTTACTGTGCAACTCATCAATTATACAAAGAGTGGTAAAAAGTTCTGGAACTTGTTTCATTTGCAACCTATGCGAGATCAGAAGGGAGAGGTACAGTACTTCATTGGAGTTCAACTTGATGGTAGTCAACACGTGGAGCCTCTTCAAAACCGCATTGCAGAAGATACTGCAAAAGAGGGAGAACAATTGGTAAAAGAAACAGCTGAAAATGTCGATGATGCACTGAAAGAACTTCCAGATGCTAATTTGAAACCAGAAGATTTATGGATGAATCATACAAAAGTGGTTCACCCCAAACCTCATAGGAGGGATGAAGCTGCTTGGAAAGCTATTCAGAAGATCCTAGAAAGTGGAGAGCAGATTGGCTTGAATCATTTTAGACCAGTTAAACCTTTGGGATCAGGAGATACTGGCAGTGTCTTTCTGGTGGAGCTAGGCGAAACTGGCCAATATTTTGCCATGAAGGCTATGGAGAAGGGTGTTATGCTCAATCGTAACAAAGTACAGAATTAA 1506 0.4416 MEGLFNCNNCKGKDNNKRVGSGRGGSRFLQGADTDPDDVAKIREALQTGSTYCGRLLNYKKDGTPFWNLLTIAPIKDDDGRVLKFIGMQVEVSKHTEGTKEKMLRPNGLPESLIRYDAREKEKANSTVSELLQAVRRPRALSESAGRPVIRKSASGDDAQAKPEKPSRRKSESVSSFRRKSHAGDATSMEKITELPEKKHKTSRRRSFMGFIRKSQSNFGSFNDKAVIEDSSESSDEDDERCGSFDGKVQRREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTDVTVQLINYTKSGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNRIAEDTAKEGEQLVKETAENVDDALKELPDANLKPEDLWMNHTKVVHPKPHRRDEAAWKAIQKILESGEQIGLNHFRPVKPLGSGDTGSVFLVELGETGQYFAMKAMEKGVMLNRNKVQN 501
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01438 501 Gene3D PAS domain 22 145 - -
Spst11g01438 501 SUPERFAMILY PYP-like sensor domain (PAS domain) 272 371 IPR035965 -
Spst11g01438 501 MobiDBLite consensus disorder prediction 139 205 - -
Spst11g01438 501 ProSiteProfiles PAC domain profile. 50 104 IPR000700 -
Spst11g01438 501 Gene3D PAS domain 245 409 - -
Spst11g01438 501 SUPERFAMILY PYP-like sensor domain (PAS domain) 27 89 IPR035965 -
Spst11g01438 501 Pfam PAS domain 279 371 IPR000014 -
Spst11g01438 501 Pfam PAS domain 29 93 IPR000014 -
Spst11g01438 501 FunFam LOV domain-containing protein 245 409 - -
Spst11g01438 501 Gene3D Phosphorylase Kinase; domain 1 446 501 - -
Spst11g01438 501 ProSiteProfiles PAS repeat profile. 256 329 IPR000014 -
Spst11g01438 501 PANTHER PROTEIN TWIN LOV 1 105 448 - -
Spst11g01438 501 MobiDBLite consensus disorder prediction 157 201 - -
Spst11g01438 501 CDD PAS 271 371 IPR000014 -
Spst11g01438 501 ProSiteProfiles PAC domain profile. 330 384 IPR000700 -
Spst11g01438 501 NCBIfam PAS domain S-box protein 281 371 IPR000014 -
Spst11g01438 501 ProSitePatterns Protein kinases ATP-binding region signature. 463 486 IPR017441 GO:0005524
Spst11g01438 501 SMART pac_2 53 95 IPR001610 -
Spst11g01438 501 SMART pac_2 333 375 IPR001610 -
Spst11g01438 501 SUPERFAMILY Protein kinase-like (PK-like) 440 498 IPR011009 -
Spst11g01438 501 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01438 Spst-Chr11 38811511 38816350 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01438 3 500 AGC Kinase Gene Family AT3G45780 68.725 0.0 659
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01438 K20715 - gmx:100804524 880.937