Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01415 ATGGGCCTTTTGAGACAACGGACACAAGAAGCCCACAAAACAGATAATAATAAATCTGCTGGAACAAGGAAACATCTTCAGAGTGAAACTGGGTGTGTTATAATGGGAAATAATGGTAATGCGTGTGGAGTGAGAAGGAAAAGAAAGGGCATGCAGGAGGAATTGCATCCATCCAATAAGTGGGAGTTGAGTAAGACAAGTCAGAGTGCATATATTGTCCTTGTATGGATGGATCCTTCTAGTGGACAACACCAGCAAATGTCTAGCCAGTCATTGGAGAACATGTTGGCATGTTCCAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCTGAACAAGCTCTAAAATGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACCAAAGGAGGGACACTGAGGAACGTTCCTGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCTTCAACATCAAAGAGAATCCAAGATCAAGGATTCACAACCAATCCCAACAACCCACTCACTGGCCTTCCTTCATTGTCATATGACTCCAGTGACCTCACTCTTGCATTGGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACCTTTCAATTTTGGGGAACCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCAACAAACCCAGGGCTTTTGGATGCCCTTAGAAGTGGGTTCCTTGGAACCCAAAGTAATATGCACAATCTGTACTATGGATATGGGAATGGGGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGGGTTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTGACAGTCACTACCATGAAACAAGAGCTTTGCAATGCAAGGGAACAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGGTGAGCTTGACTCAGGAAGAGCTAATTGGAATGGTCTCACTTCATCTTGGCATGGACTTCTCAATAGTCCCCTAATGTAG 1131 0.4668 MGLLRQRTQEAHKTDNNKSAGTRKHLQSETGCVIMGNNGNACGVRRKRKGMQEELHPSNKWELSKTSQSAYIVLVWMDPSSGQHQQMSSQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSTSKRIQDQGFTTNPNNPLTGLPSLSYDSSDLTLALARLQKQSCGQLGYDEHDLSILGNPTSTPCDILGNPGMHHSSTNPGLLDALRSGFLGTQSNMHNLYYGYGNGDMGEVDNGNACGGVGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMGELDSGRANWNGLTSSWHGLLNSPLM 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01415 376 Pfam Dof domain, zinc finger 113 169 IPR003851 GO:0003677|GO:0006355
Spst11g01415 376 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 90 252 IPR045174 GO:0003700|GO:0006355
Spst11g01415 376 ProSitePatterns Zinc finger Dof-type signature. 117 153 IPR003851 GO:0003677|GO:0006355
Spst11g01415 376 MobiDBLite consensus disorder prediction 160 197 - -
Spst11g01415 376 ProSiteProfiles Zinc finger Dof-type profile. 115 169 IPR003851 GO:0003677|GO:0006355
Spst11g01415 376 MobiDBLite consensus disorder prediction 166 197 - -
Spst11g01415 376 MobiDBLite consensus disorder prediction 8 22 - -
Spst11g01415 376 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01415 Spst-Chr11 38541509 38551706 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01415 77 376 C2C2-Dof Transcription Factor Family AT2G28510 40.476 1.53e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Spst11g01415 zf-Dof 8.7e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01415 - - gmx:100799737 474.937