Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01411 ATGGAGAGCAGTGACACATATACCCCTACTTCCTCTGCCCCACTTTCTCACTCCCCCACTTCCTCTTCTTCCTCACCACCACCTCCTCCACCTCCCACAATTGTCATGAGCCCTTGTGCTGCATGCAAAATTTTGAGGAGAAGATGTGCTGAGAAATGTGTTTTGGCACCTTATTTCCCTCCCACTGAACCTGCCAAGTTTACCATTGCTCACCGTGTATTTGGTGCCAGCAACATCATCAAGTTCCTACAGGAACTTCCAGAGTCTCAGAGGGCTGATGCAGTGACCAGCATGGTTTACGAGGCTAGTGCAAGAGTAAGAGACCCTGTTTATGGTTGTGCAGGAGCAATTTGCCAGCTCCAGAAGCAGGTGAATGAACTTCAAGCACAATTGGCCAAGTCACAAGCTGAGCTTGTAACCATGCAACTTCAGCAAGCCAATCTTGTGGCTCTAATATGCATGGAAATGGCACAGAGTCCACAGGAATCACCACAACAATCAGTGGACAATTTCATTTCAACTCCTCCTCACACTGGTGCCTATCAAAATGGGATGAACTTCTTTGAGGAGAACACTAGCCCTAACTCACTATGGGAGCCCCTTTGGACCTGA 612 0.482 MESSDTYTPTSSAPLSHSPTSSSSSPPPPPPPTIVMSPCAACKILRRRCAEKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVTSMVYEASARVRDPVYGCAGAICQLQKQVNELQAQLAKSQAELVTMQLQQANLVALICMEMAQSPQESPQQSVDNFISTPPHTGAYQNGMNFFEENTSPNSLWEPLWT 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01411 203 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Spst11g01411 203 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
Spst11g01411 203 MobiDBLite consensus disorder prediction 1 20 - -
Spst11g01411 203 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 165 - -
Spst11g01411 203 Coils Coil 117 144 - -
Spst11g01411 203 MobiDBLite consensus disorder prediction 1 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01411 Spst-Chr11 38486450 38488003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01411 34 203 AS2 family AT2G28500 66.486 5.08e-79 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Spst11g01411 LOB 3.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01411 - - gmx:100789504 337.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst11g01411 11 38486450 38488003 Spst11g01411 11 38486450 38488003 ECH
Spst5g00577 5 4810480 4811670 Spst11g01411 11 38486450 38488003 PCT