Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst11g01409 ATGTTATGCTTTTTATTTTGTGTGGAGGTTTTGATATCTTGCTTTTCTGGTCAGGTGAATAGAAAATGGCCTGCAAAACAGCGGAAGATTGCTCTGTTGGTTGATGAAGCTGATCTGCTTCAAAAAAAGTTTAGACTATGCTGTTTAAGTTATTCGGCCAGACGAGATGTCAAGTTTGCATTTAAGCTTGCGAGAGATGCAATTGTGTCTCGGTCCATGAGCCCGTCGGAGCCTGGGAGTAGTAAGAGTGTGAATGAAACTTGTGTTATATGTTTGGAGGATACTGATGTCAGTCAGATTTTTTCAGTTGATAGATGTCAACACCGCTATTGCTTCTCTTGCATGAAACAACATGTGGAGGTGAAGTTGCTTCATGGAATTTTGCCAAAGTGCCCTCATGAGGGGTGTGAGTATGAGCTTCTGGTTGACAGCTGTCAGAACTTTTTGACTCCAAAGTTAACTGAGACCATGCGGCAACGCAAATTGGAAGCTTCAATTCCTGCTGCTGAAAAAGTTTACTGCCCTTATCCAAGATGCTCTGCATTAATGACAAGAACCGAGGTCTTTGAGTATTCGGAAAATCTTATTGGCGTATCTGACCAAGCAGGACCAAAGAAATGCTTAAAATGTCATGGCCTTTTCTGTTTTAATTGCAAGGTCCCTTGGCATAGCGGTATGACATGTCTTGTTTACAAAAGGTTGAATCCAAATCCTCCTGCAGAAGATTTGAAGCTGAAGTCTCTGGCATCAAGGAACCGATGGCGTCAGTGCGTGAAGTGTAACTATGTCATTGAACTTGCTGAAGGTTGCTATCACATGACTTGCAGATGCGGTTTCGAATTTTGCTATATCTGTGGAGCTGAGTGGAAGGAAAAAAAAGCAACGTGTGATTGCCCACTCTGGGCAGAGGACAATATTTGGATTGAGGATCACGAGAGTGATTGGGAAGAAGAAGATGAAGATTGGGAAGATGATAATTATGATGGTTTTTAA 993 0.4199 MLCFLFCVEVLISCFSGQVNRKWPAKQRKIALLVDEADLLQKKFRLCCLSYSARRDVKFAFKLARDAIVSRSMSPSEPGSSKSVNETCVICLEDTDVSQIFSVDRCQHRYCFSCMKQHVEVKLLHGILPKCPHEGCEYELLVDSCQNFLTPKLTETMRQRKLEASIPAAEKVYCPYPRCSALMTRTEVFEYSENLIGVSDQAGPKKCLKCHGLFCFNCKVPWHSGMTCLVYKRLNPNPPAEDLKLKSLASRNRWRQCVKCNYVIELAEGCYHMTCRCGFEFCYICGAEWKEKKATCDCPLWAEDNIWIEDHESDWEEEDEDWEDDNYDGF 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst11g01409 330 CDD Rcat_RBR_unk 253 289 - -
Spst11g01409 330 FunFam RBR-type E3 ubiquitin transferase 226 330 - -
Spst11g01409 330 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 61 305 IPR031127 GO:0004842|GO:0016567
Spst11g01409 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 169 IPR013083 -
Spst11g01409 330 CDD BRcat_RBR_unk 168 228 - -
Spst11g01409 330 ProSiteProfiles TRIAD supradomain profile. 84 308 IPR044066 -
Spst11g01409 330 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Spst11g01409 330 Pfam IBR domain, a half RING-finger domain 242 296 IPR002867 GO:0008270
Spst11g01409 330 Pfam IBR domain, a half RING-finger domain 160 228 IPR002867 GO:0008270
Spst11g01409 330 SMART ibrneu5 155 228 IPR002867 GO:0008270
Spst11g01409 330 SMART ibrneu5 241 298 IPR002867 GO:0008270
Spst11g01409 330 SUPERFAMILY RING/U-box 86 168 - -
Spst11g01409 330 ProSiteProfiles Zinc finger RING-type profile. 88 132 IPR001841 -
Spst11g01409 330 SUPERFAMILY RING/U-box 242 305 - -
Spst11g01409 330 FunFam RBR-type E3 ubiquitin transferase 83 168 - -
Spst11g01409 330 Gene3D - 226 328 - -
Spst11g01409 330 Pfam Reverse transcriptase-like 18 67 IPR002156 GO:0003676|GO:0004523
Spst11g01409 330 SUPERFAMILY RING/U-box 169 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst11g01409 Spst-Chr11 38466144 38468203 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst11g01409 19 287 C3H Transcription Factor Family AT2G19610 33.088 1.34e-42 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst11g01409 - - gmx:100786163 506.908